View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17828_low_8 (Length: 518)
Name: NF17828_low_8
Description: NF17828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17828_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 502
Target Start/End: Complemental strand, 24128515 - 24128012
Alignment:
| Q |
7 |
agtcttttactcatcataattactcttaatttatatttacattatttaaacttacattttcttgtttgcagctagcatgcctttgtatttgtatcccctc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24128515 |
agtcttttactcatcataattactcttaatttatatttacattatttaaacttacattttcttgtttgcagctagcatgcctttgtatttgtatcccttc |
24128416 |
T |
|
| Q |
107 |
cttaaaacaaaagaaaagtcaccacagtttgagtatttaaggtttgcaagtcttggagtcattggtgctttagtgaaggtattacatgaaaataaagtca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128415 |
cttaaaacaaaagaaaagtcaccacagtttgagtatttaaggtttgcaagtcttggagtcattggtgctttagtgaaggtattacatgaaaataaagtca |
24128316 |
T |
|
| Q |
207 |
ttttaattacaaaaaatattgtcacaaaaaacttacaatgtttgatagtgccttgaatgtttcatttacataaaatttgtaccaataaattattgatcat |
306 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128315 |
ttttaattacaaaaaatatcgtcacaaaaaacttacaatgtttgattgtgccttgaatgtttcatttacataaaatttgtaccaataaattattgatcat |
24128216 |
T |
|
| Q |
307 |
attcaaacaaaaaacactaatcactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128215 |
attcaaacaaaaaacactaatcactaattatttttaaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctct |
24128116 |
T |
|
| Q |
407 |
tggtgtgctttcaattata--------nnnnnnnnnnnngacagatttcaattatatctatttaagtttcaaattcattcttataaaagtttcatatatt |
498 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24128115 |
tggtgtgctttcaattatatatatattttttttttttttgacagatttcaattatatctatttaagtttcaaattcattcttataaaagtttcatatatt |
24128016 |
T |
|
| Q |
499 |
tagt |
502 |
Q |
| |
|
|||| |
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|
| T |
24128015 |
tagt |
24128012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 46 - 408
Target Start/End: Original strand, 45159954 - 45160321
Alignment:
| Q |
46 |
cattatttaaacttacattttcttgtttgcagctagcatgcctttgtatttgtatcccctccttaaaacaaaagaaaagtcaccacagtttgagtattta |
145 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
45159954 |
cattatttacacttacattttcttgtttgcagctagcatacctttgtatttgtatcccttccttaaaacaaaagacaagtcaccgcagtttgagtattta |
45160053 |
T |
|
| Q |
146 |
aggtttgcaagtcttggagtcattggtgctttagtgaaggtattacatgaaaataaagtcattttaattacaaaaaatattgtcacaaaaaacttacaat |
245 |
Q |
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||| |||||||||| |||||||||||||| || ||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45160054 |
aggcttgcaagtctcggagtcattggtgccttggtgaaggtattacgtgaaaagaaagtaattttaattacaaaaaatattgtcacaaaaaacttacaat |
45160153 |
T |
|
| Q |
246 |
gtttgatagtgccttgaatgtttcattt-----acataaaatttgtaccaataaattattgatcatattcaaacaaaaaacactaatcactaattatttt |
340 |
Q |
| |
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|||| |||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
45160154 |
gttttatagcgccttgaatgtgtcatttacataacataaaatttgtaccaataaattattgatcacattcatacaaaaaacactaatcactaattatttt |
45160253 |
T |
|
| Q |
341 |
taaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45160254 |
taaaactatagaaagtagctagttatgagccaaataattggttgacttgcagttttatcatgctcttg |
45160321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 45159692 - 45159731
Alignment:
| Q |
7 |
agtcttttactcatcataattactcttaatttatatttac |
46 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
45159692 |
agtcttttattcatcataattactcttaatttatatttac |
45159731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 480
Target Start/End: Original strand, 45160323 - 45160359
Alignment:
| Q |
444 |
tttcaattatatctatttaagtttcaaattcattctt |
480 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
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|
| T |
45160323 |
tttcaattatatctatttaagtttcaaattcagtctt |
45160359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 9518240 - 9518362
Alignment:
| Q |
71 |
tttgcagctagcatgcctttgtatttgtatcccctccttaaaacaaaagaaaagtcaccacagtttgagtatttaaggtttgcaagtcttggagtcattg |
170 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||| |||||| | ||| | | || |||||| ||||||| |||| |||||||||||||| | |
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|
| T |
9518240 |
tttgcagctagcatgcctttatatttttatccattccttcaaacaacaagcgagttagcccaatttgagcatttaagacttgctagtcttggagtcatcg |
9518339 |
T |
|
| Q |
171 |
gtgctttagtgaaggtattacat |
193 |
Q |
| |
|
|||| || ||||||||||||||| |
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| T |
9518340 |
gtgcgttggtgaaggtattacat |
9518362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 40806492 - 40806454
Alignment:
| Q |
155 |
agtcttggagtcattggtgctttagtgaaggtattacat |
193 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
40806492 |
agtcttggagtcattggtgctttggtgaaggtattacat |
40806454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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