View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17829_high_11 (Length: 328)
Name: NF17829_high_11
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 310
Target Start/End: Complemental strand, 41307094 - 41306793
Alignment:
| Q |
9 |
cgaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttaca |
108 |
Q |
| |
|
||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
41307094 |
cgaagaataccagaagtatataagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttaca |
41306995 |
T |
|
| Q |
109 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41306994 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctcggtgcttttcttccttattactcttt |
41306895 |
T |
|
| Q |
209 |
taaatgtaaccctgaaaattaaccatgaaagacttcaatacttcattttctccaattaagagtggtagatgatgaattgattatgttatgtaacttacat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41306894 |
taaatgtaaccctgaaaattaaccatgaaagacttcaatacttcattttctccaattaagagtggtagatgatgaattaattatgttatgtaacttacat |
41306795 |
T |
|
| Q |
309 |
tg |
310 |
Q |
| |
|
|| |
|
|
| T |
41306794 |
tg |
41306793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 41297232 - 41297011
Alignment:
| Q |
9 |
cgaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttaca |
108 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297232 |
cgaagaataccagaaataaatgagaacataagataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttaca |
41297133 |
T |
|
| Q |
109 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41297132 |
ataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttt |
41297033 |
T |
|
| Q |
209 |
taaatgtaaccctgaaaattaa |
230 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
41297032 |
taaatgtaaccctgaaaattaa |
41297011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 218
Target Start/End: Original strand, 9612061 - 9612269
Alignment:
| Q |
10 |
gaagaatatcagaaataaatgagaacataggataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttacaa |
109 |
Q |
| |
|
|||||||| || ||||||||||||||||| | || ||| | | ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
9612061 |
gaagaataccaaaaataaatgagaacataagctagctccaaaacaattccaactccattaacagtgacaagaggaaaattttcccacttgttacttacaa |
9612160 |
T |
|
| Q |
110 |
taggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactctttt |
209 |
Q |
| |
|
|||| || |||||||| |||||||| ||||| ||||| | ||| || |||||||||| |||||||||||||| |||||||| |||||||| || ||||| |
|
|
| T |
9612161 |
taggcaatccataccaagtgaaaaggagacagttcaatagtcctatagtgtaaggaatacatgaaaattcctcagtgctttttttccttatcaccctttt |
9612260 |
T |
|
| Q |
210 |
aaatgtaac |
218 |
Q |
| |
|
|| ||||| |
|
|
| T |
9612261 |
gaaagtaac |
9612269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University