View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17829_high_12 (Length: 322)

Name: NF17829_high_12
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17829_high_12
NF17829_high_12
[»] chr6 (1 HSPs)
chr6 (13-308)||(30522653-30522948)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 30522948 - 30522653
Alignment:
Q  13 aatatccataattcttgtacattttacaaataacttttaagtaacttcattgtgtttaatgctattgcacttggcatgttcaaaatgatcaattttcata 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30522948 aatatccataattcttgtacattttacaaataacttttaagtaacttcattgtgtttaatgctattgcacttggcatgttcaaaatgatcaattttcata 30522849  T
Q  113 acctaaattgcaaagtgaataatcttatgcaggctccggtggtgaaaaagtatccagcaaaactcacactgacatcatttacatgtttctttggattgat 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30522848 acctaaattgcaaagtgaataatcttatgcaggctccggtggtgaagaagtatccagcaaaactcacactgacatcatttacatgtttctttggattgat 30522749  T
Q  213 acaattcttgatcatagcagccttcacagaaaatgattttgaaaagtggaagatacaatcatcagaggagctttttaccatcctatatgctgtaat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30522748 acaattcttgatcatagcagccttcacagaaaatgattttgaaaagtggaagatacaatcatcagaggagctttttaccatcctatatgctgtaat 30522653  T

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