View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_high_14 (Length: 287)
Name: NF17829_high_14
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 9544921 - 9544653
Alignment:
| Q |
1 |
tcgtagttcttaccataaagtacccaatgaggaaaccataaatggacaattcagtagcatagttcttgtctaacacaatgctccaaattccactcactag |
100 |
Q |
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| T |
9544921 |
tcgtagttcttaccataaagtacccaatgaggaaaccataaatggacaattcagtagcatagttcttgtctaacacaatgctccaaattccactcactag |
9544822 |
T |
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| Q |
101 |
gctactaattgcacccccggccactccactaaagaagcaaaatgatccagtgagatccaagtctataagttgcaccaatccaaccctattaaaaatgtcc |
200 |
Q |
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| T |
9544821 |
gctactaattgcacccccagccactccactaaagaagcaaaatgatccagtgagatccaagtctataagttgcaccaatccaaccctattaaaaatgtcc |
9544722 |
T |
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| Q |
201 |
caagtatcacatgatgcttgcacaaaccctttattataaactccaacatgcacaaaaccaaacctattt |
269 |
Q |
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| T |
9544721 |
caagtatcacatgatgcttgcacaaaccctttattataaactccaacatgcacaaaaccaaacctattt |
9544653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 33709670 - 33709924
Alignment:
| Q |
5 |
agttcttaccataaagtacccaatgaggaaaccataaatggacaattcagtagcatagttcttgtctaacacaatgctccaaattccactcactaggcta |
104 |
Q |
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||||||||||| || || |||||||||||| |||||||||| ||||| | ||||||||||||| | | || ||||| ||||||||||| || ||| |
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| T |
33709670 |
agttcttaccaggaaatagccaatgaggaaagcataaatggataattccatggcatagttcttgtacagtataagactccagattccactcacaagacta |
33709769 |
T |
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| Q |
105 |
ctaattgcacccccggccactccactaaagaagcaaaatgatccagtgagatccaagtctataagttgcaccaatccaaccctattaaaaatgtcccaag |
204 |
Q |
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| T |
33709770 |
caaattgcacctactgcaacaccactaagaaaacagaatgcaccagtgagatccaaatctatcaattcctctaatccaactctaatgaacatgtcccaag |
33709869 |
T |
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| Q |
205 |
tatcacatgatgcttgcacaaaccctttattataaactccaacatgcacaaaacc |
259 |
Q |
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||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33709870 |
tatcagaagatgcttgcacaaaccctttgttataaactccaacatgcacaaaacc |
33709924 |
T |
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