View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17829_high_2 (Length: 586)

Name: NF17829_high_2
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17829_high_2
NF17829_high_2
[»] chr8 (15 HSPs)
chr8 (12-571)||(13787347-13787911)
chr8 (383-559)||(7164764-7164941)
chr8 (383-558)||(3286627-3286802)
chr8 (207-377)||(3391250-3391420)
chr8 (208-377)||(3315175-3315344)
chr8 (216-377)||(3364486-3364647)
chr8 (405-567)||(3262760-3262922)
chr8 (419-507)||(13808670-13808758)
chr8 (157-211)||(3262267-3262321)
chr8 (207-269)||(3286232-3286294)
chr8 (208-269)||(7164376-7164437)
chr8 (384-455)||(3375095-3375166)
chr8 (328-378)||(3324841-3324891)
chr8 (423-563)||(3267350-3267490)
chr8 (210-242)||(3375798-3375830)
[»] chr5 (2 HSPs)
chr5 (216-377)||(15803228-15803389)
chr5 (384-505)||(12599165-12599286)
[»] chr3 (1 HSPs)
chr3 (460-563)||(32411269-32411372)
[»] scaffold0468 (1 HSPs)
scaffold0468 (218-260)||(5895-5937)
[»] chr2 (2 HSPs)
chr2 (208-269)||(14766659-14766720)
chr2 (384-505)||(14767060-14767181)


Alignment Details
Target: chr8 (Bit Score: 533; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 12 - 571
Target Start/End: Complemental strand, 13787911 - 13787347
Alignment:
Q  12 aagaatattttcggagagcacagcagttctatttcttctggttgttatactaaagacaaattttggaattgattcatattcatcttgtgatcgccatcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787911 aagaatattttcggagagcacagcagttctatttcttctggttgttatactaaagacaaattttggaattgattcatattcatcttgtgatcgccatcat 13787812  T
Q  112 tgtttcagtttattcttttcttcaggatttaacatattata-----atagataaaggttagaaaaggcaaaaggatagaaaaggaacctgtgatatgctc 206  Q
    |||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787811 tgtttcagtttattcttttcttcaggatttaacatattatattataatagataaaggttagaaaaggcaaaaggatagaaaaggaacctgtgatatgctc 13787712  T
Q  207 tttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787711 tttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaa 13787612  T
Q  307 gaaatcttcttaatacttctttcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaaaaaaccacttcttttacaagtgtattatt 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787611 gaaatcttcttaatacttctttcagatgaatctctgattggcaatgtaccgaaacacttctatgttttgaaaaaaccacttcttttacaagtgtattatt 13787512  T
Q  407 tgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaaggatgagagtcttcaatgatttcaac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13787511 tgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgtacaacctaaaaggatgagagtcttcaatgatttcaac 13787412  T
Q  507 ttacagatattctttggaaacttgctaagacttatacagttcttcaaatttatcagatgaatatt 571  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787411 ttaaagatattctttggaaacttgctaagacttatacagttcttcaaatttatcagatgaatatt 13787347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 383 - 559
Target Start/End: Original strand, 7164764 - 7164941
Alignment:
Q  383 cacttcttttacaagtgtattatttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaagg 482  Q
    |||||||||||||  ||||| |||||  ||||||  ||||||||||| |||||||| |||||||| ||||||| || ||||||| | ||||||  |||||    
T  7164764 cacttcttttacagctgtatcatttgcgatcagtgttgtcaaggatttcatctgcattatgtcttcttccaactaggcaatctttgaacaaccagaaagg 7164863  T
Q  483 atgagagtcttcaatgatttcaactt-acagatattctttggaaacttgctaagacttatacagttcttcaaatttat 559  Q
    |||||||| ||||||||||||||||| | |||||||| |||| |  |||||||||||| |||||| ||||||||||||    
T  7164864 atgagagttttcaatgatttcaacttgatagatattccttgggagattgctaagacttgtacagtccttcaaatttat 7164941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 383 - 558
Target Start/End: Original strand, 3286627 - 3286802
Alignment:
Q  383 cacttcttttacaagtgtattatttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaagg 482  Q
    ||||||||| |||  ||||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||  | ||||||| | ||||||  |||||    
T  3286627 cacttctttaacagctgtattatttgcaatcagtgttgtcaaggattccatctgcactatgtcttcttccaacttgtcaatctttgaacaaccagaaagg 3286726  T
Q  483 atgagagtcttcaatgatttcaacttacagatattctttggaaacttgctaagacttatacagttcttcaaattta 558  Q
    |||||||| ||||| |||||||  | | ||||| ||||||| |  |||||||||| |||||||| |||||||||||    
T  3286727 atgagagtgttcaaagatttcagttgatagatactctttgggagattgctaagacctatacagtccttcaaattta 3286802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 207 - 377
Target Start/End: Original strand, 3391250 - 3391420
Alignment:
Q  207 tttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaa 306  Q
    ||||| |||||||||||||| |||||||||||| |||||||||| ||||||||||| ||| |||| | || ||| ||||| ||| | |||||| | ||||    
T  3391250 tttcccattccaatcaaaagagatctcaaggaatgatccgaaatgtgtgatgcatgtgatattcccaattcagtaagaccggcatcatatagatcatcaa 3391349  T
Q  307 gaaatcttcttaatacttctttcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaa 377  Q
    |||||||||| ||| ||| |||||| ||||||||||| |  || |||| ||||||||||||| ||||||||    
T  3391350 gaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtaccgaaacacttctaagttttgaa 3391420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 208 - 377
Target Start/End: Complemental strand, 3315344 - 3315175
Alignment:
Q  208 ttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaag 307  Q
    |||| ||||||| |||||| |||||||||||||||||| ||||||||||| |||| |||||||||| || ||| ||||||||| | |||| | | |||||    
T  3315344 ttccgattccaaacaaaagagatctcaaggaaagatccaaaatttgtgatccatgtgatgttccaaattcagtaagacctgcatcatatatatcatcaag 3315245  T
Q  308 aaatcttcttaatacttctttcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaa 377  Q
    ||||||||| ||| ||| |||||| ||||||||||| |  || ||||  |||||||||||| ||||||||    
T  3315244 aaatcttctgaattcttgtttcagttgaatctctgagtcacattgtactgaaacacttctaagttttgaa 3315175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 377
Target Start/End: Complemental strand, 3364647 - 3364486
Alignment:
Q  216 ccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaagaaatcttc 315  Q
    |||| |||||| ||||||| || ||||| |||||||||| ||||||| |||||||  |||| ||| ||||||||| | |||||| | |||||||||||||    
T  3364647 ccaaacaaaagggatctcatggtaagattcgaaatttgtaatgcatgtgatgttctcatttcagtaagacctgcatcatatagatcatcaagaaatcttc 3364548  T
Q  316 ttaatacttctttcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaa 377  Q
      ||| |||  ||||| ||||||||||| |  || |||| ||||||||||||| || |||||    
T  3364547 cgaattcttgcttcagttgaatctctgaatcacattgtaccgaaacacttctaagtcttgaa 3364486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 405 - 567
Target Start/End: Original strand, 3262760 - 3262922
Alignment:
Q  405 tttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaaggatgagagtcttcaatgatttca 504  Q
    |||| |||||||  ||||||||||||||||||||||||||||| ||||||   | ||||||| |  |||||  |||| |||||||| ||||| |||||||    
T  3262760 tttgcaatcagtgttgtcaaggattccatctgcactatgtcttcttccaatttgtcaatctttgagcaaccagaaagtatgagagttttcaaagatttca 3262859  T
Q  505 acttacagatattctttggaaacttgctaagacttatacagttcttcaaatttatcagatgaa 567  Q
    | |   | ||||||||||| |  ||   ||||||| |||||| |||||||||||||| |||||    
T  3262860 attggtatatattctttgggagattttgaagacttctacagtccttcaaatttatcatatgaa 3262922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 419 - 507
Target Start/End: Complemental strand, 13808758 - 13808670
Alignment:
Q  419 tgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaaggatgagagtcttcaatgatttcaact 507  Q
    |||||||||||||||||| |||||||||| |||||||  | ||||||| | ||||||  ||| ||| ||||| ||||||||||||||||    
T  13808758 tgtcaaggattccatctggactatgtcttcttccaacttgtcaatctttgaacaaccagaaaagattagagttttcaatgatttcaact 13808670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 3262267 - 3262321
Alignment:
Q  157 ataaaggttagaaaaggcaaaaggatagaaaaggaacctgtgatatgctctttcc 211  Q
    ||||||| || ||||| ||| |||||||| |||||||||||||||||||||||||    
T  3262267 ataaagggtaaaaaagccaagaggatagagaaggaacctgtgatatgctctttcc 3262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 3286232 - 3286294
Alignment:
Q  207 tttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgtt 269  Q
    ||||| ||||||||||||||||||||||| ||| |||  || |||||||||||||| ||||||    
T  3286232 tttcccattccaatcaaaagtgatctcaaagaaggatttgagatttgtgatgcatgtgatgtt 3286294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 7164376 - 7164437
Alignment:
Q  208 ttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgtt 269  Q
    |||| |||||||||||||||||||||||||||||||  || |||| ||||| ||| ||||||    
T  7164376 ttcccattccaatcaaaagtgatctcaaggaaagatttgagatttctgatgaatgtgatgtt 7164437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 3375166 - 3375095
Alignment:
Q  384 acttcttttacaagtgtattatttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaac 455  Q
    |||||||||| |  |||||| || ||||||| |  |||||||||||||||||||| |||||||| |||||||    
T  3375166 acttcttttatagatgtatttttggtaatcattgttgtcaaggattccatctgcattatgtcttcttccaac 3375095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 3324841 - 3324891
Alignment:
Q  328 tcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaaa 378  Q
    |||| |||||||||||| |||| || ||| |||||||||||||||||||||    
T  3324841 tcagttgaatctctgatcggcattgaatccaaacacttctatgttttgaaa 3324891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 423 - 563
Target Start/End: Original strand, 3267350 - 3267490
Alignment:
Q  423 aaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaaggatgagagtcttcaatgatttcaacttacagatattctttg 522  Q
    ||||||||||||||||||||| ||| ||| |||  | ||||||| | ||||||  ||| |||||||||  |||| || ||||| | |   || |||||||    
T  3267350 aaggattccatctgcactatgccttcttctaacttgtcaatctttgaacaaccagaaatgatgagagttgtcaaagacttcaattgatttatcttctttg 3267449  T
Q  523 gaaacttgctaagacttatacagttcttcaaatttatcaga 563  Q
    | |  |||||||||||| |||| |  |||||||||||||||    
T  3267450 ggagattgctaagacttgtacaatctttcaaatttatcaga 3267490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 3375830 - 3375798
Alignment:
Q  210 cctattccaatcaaaagtgatctcaaggaaaga 242  Q
    |||||||||||||||||||||||||| ||||||    
T  3375830 cctattccaatcaaaagtgatctcaaagaaaga 3375798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 377
Target Start/End: Complemental strand, 15803389 - 15803228
Alignment:
Q  216 ccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaagaaatcttc 315  Q
    |||| |||||| ||||||| | ||||||||||||||||| |||| || |||||||| | || ||| ||||||||| | ||||||   |||||||||||||    
T  15803389 ccaaacaaaagggatctcatgaaaagatccgaaatttgtaatgcctgtgatgttcccacttcagtaagacctgcatcatatagattatcaagaaatcttc 15803290  T
Q  316 ttaatacttctttcagatgaatctctgattggcaatgtatcgaaacacttctatgttttgaa 377  Q
    | ||| ||| |||||| ||||||||||| |  || ||||  |||||||||||| || |||||    
T  15803289 tgaattcttgtttcagttgaatctctgagtcacattgtactgaaacacttctaagtcttgaa 15803228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 12599165 - 12599286
Alignment:
Q  384 acttcttttacaagtgtattatttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaagga 483  Q
    |||||||||| |  |||||| || | |||||||  |||||||||||||||||| |||||||||| |||||||  || |||||| | ||||||  |||| |    
T  12599165 acttcttttatagatgtatttttggcaatcagtgttgtcaaggattccatctgtactatgtcttcttccaacttgctaatctttgaacaaccagaaagta 12599264  T
Q  484 tgagagtcttcaatgatttcaa 505  Q
    | ||||| ||||| | ||||||    
T  12599265 taagagttttcaaagttttcaa 12599286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 563
Target Start/End: Original strand, 32411269 - 32411372
Alignment:
Q  460 caatcttcgcacaacctaaaaggatgagagtcttcaatgatttcaacttacagatattctttggaaacttgctaagacttatacagttcttcaaatttat 559  Q
    ||||||| | ||||||  ||||||||||||| ||||| |||||||| | | | || |||||||| |   || |||||||| |||||| ||||||||||||    
T  32411269 caatctttgaacaaccagaaaggatgagagttttcaaagatttcaattgatatatcttctttgggagactgttaagacttgtacagtccttcaaatttat 32411368  T
Q  560 caga 563  Q
    ||||    
T  32411369 caga 32411372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 260
Target Start/End: Original strand, 5895 - 5937
Alignment:
Q  218 aatcaaaagtgatctcaaggaaagatccgaaatttgtgatgca 260  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||    
T  5895 aatcaaaagagatttcaaggaaagatccgagatttgtgatgca 5937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 14766659 - 14766720
Alignment:
Q  208 ttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgtt 269  Q
    |||| ||||||||||||||||| ||||| |||||| | || |||||||||| ||| ||||||    
T  14766659 ttcccattccaatcaaaagtgacctcaacgaaagaacagagatttgtgatgtatgtgatgtt 14766720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 505
Target Start/End: Original strand, 14767060 - 14767181
Alignment:
Q  384 acttcttttacaagtgtattatttgtaatcagttctgtcaaggattccatctgcactatgtctttttccaacgagccaatcttcgcacaacctaaaagga 483  Q
    |||||||||| |  ||||||  ||| |||||||  ||||||||||||||| ||||| || |||| ||||||   | ||||||| | ||| ||  ||||||    
T  14767060 acttcttttatagatgtatttgttgcaatcagtgatgtcaaggattccatttgcacaatatcttcttccaatttgtcaatctttgaacagccggaaagga 14767159  T
Q  484 tgagagtcttcaatgatttcaa 505  Q
    ||||||| ||||| ||||||||    
T  14767160 tgagagttttcaaagatttcaa 14767181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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