View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17829_high_3 (Length: 550)

Name: NF17829_high_3
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17829_high_3
NF17829_high_3
[»] chr5 (15 HSPs)
chr5 (25-540)||(42835060-42835591)
chr5 (106-267)||(16487530-16487691)
chr5 (319-535)||(16487234-16487450)
chr5 (93-269)||(29417622-29417798)
chr5 (93-269)||(24654559-24654735)
chr5 (405-535)||(42777391-42777521)
chr5 (155-248)||(42841429-42841522)
chr5 (142-223)||(42782296-42782377)
chr5 (152-269)||(21698753-21698870)
chr5 (154-211)||(27174351-27174408)
chr5 (154-232)||(40415105-40415183)
chr5 (115-193)||(42797141-42797219)
chr5 (149-194)||(31788657-31788702)
chr5 (142-223)||(41227038-41227119)
chr5 (149-194)||(32031997-32032042)
[»] chr2 (3 HSPs)
chr2 (154-269)||(16920108-16920223)
chr2 (154-192)||(7429892-7429930)
chr2 (154-206)||(29353318-29353370)
[»] chr6 (2 HSPs)
chr6 (125-223)||(21375219-21375317)
chr6 (152-223)||(21379311-21379382)
[»] scaffold0068 (1 HSPs)
scaffold0068 (152-269)||(15040-15157)
[»] scaffold0134 (2 HSPs)
scaffold0134 (152-223)||(17122-17193)
scaffold0134 (319-360)||(16972-17013)
[»] chr8 (1 HSPs)
chr8 (154-206)||(4027058-4027110)
[»] chr4 (1 HSPs)
chr4 (321-365)||(48742657-48742701)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 25 - 540
Target Start/End: Complemental strand, 42835591 - 42835060
Alignment:
Q  25 tcctcggtgcaattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaaggtaaaggtaagaaaccaatctcatatacctaatgatcttt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42835591 tcctcggtgcaattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaatgtaaaggtaagaaaccaatctcatatacctaatgatcttt 42835492  T
Q  125 tcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgac 224  Q
    ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42835491 tcttctttattctctccaaaatgtctattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttgtttgataatctttatttcatgac 42835392  T
Q  225 tatgtatcacaactctttcttaacaaagaatcatccttattatgac----------------tacatcaaacttttcatacttatttacaagaaccatac 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||    
T  42835391 tatgtatcgcaactctttcttaacaaagaatcatccttattatgacgatacatctgtcctcctacatcaaacttttcatacttatttacaagaaccatac 42835292  T
Q  309 cagttgcaaactctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42835291 cagttgcaaactctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccgatatatctgcataaagaagagtatg 42835192  T
Q  409 gttccggttttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataa 508  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835191 attccggttttaatattattggttctggcagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataa 42835092  T
Q  509 ggaatttaagctgcttcctcccagcccctttg 540  Q
    ||||||||||||||||||||||||||| ||||    
T  42835091 ggaatttaagctgcttcctcccagcccttttg 42835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 106 - 267
Target Start/End: Complemental strand, 16487691 - 16487530
Alignment:
Q  106 catatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttg 205  Q
    |||||| |||||||||||||||||| | ||||||  ||| || | || |||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  16487691 catatatctaatgatcttttcttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggtcgcttttatttg 16487592  T
Q  206 ataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattat 267  Q
    |||| |   |||||||||||||||||| |||   | ||||||||||| ||||| ||||||||    
T  16487591 ataacccacatttcatgactatgtatcgcaataatctcttaacaaaggatcattcttattat 16487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 535
Target Start/End: Complemental strand, 16487450 - 16487234
Alignment:
Q  319 ctctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatggttccggttt 418  Q
    ||||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||||| ||||||| | || ||   ||||||| ||| |||||    
T  16487450 ctcttgctggtaagaggtttgagaataggatcaaattagattggccaagtgtcaaattagatcctatatatcgggatcaaacggagtatgattctggttt 16487351  T
Q  419 taatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataaggaatttaag 518  Q
    ||||||  | || ||||| || |||| ||||||| | ||| || | |||||||| || |  |||||| |||||||||||||||||| || ||||||||||    
T  16487350 taatatattaggatctggcagcgttcttggaactctgtgtctgttttgtgcatcccatgtgaatattttattgtggaatccatctactatggaatttaag 16487251  T
Q  519 ctgcttcctcccagccc 535  Q
    |   |||||||||||||    
T  16487250 cacattcctcccagccc 16487234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 29417798 - 29417622
Alignment:
Q  93 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||| | |||||||| ||||| || ||||| |||||||||    
T  29417798 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatgg 29417699  T
Q  193 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 269  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  29417698 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 29417622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 24654559 - 24654735
Alignment:
Q  93 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||||| || ||||| ||||| || ||||  |||||||||    
T  24654559 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatgg 24654658  T
Q  193 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 269  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  24654659 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 24654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 535
Target Start/End: Original strand, 42777391 - 42777521
Alignment:
Q  405 tatggttccggttttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatcta 504  Q
    |||| ||| |||||| ||||| | |||||||||||||||||||||| | | ||| || | ||||||| | |||||||||||||||||||||| |||||||    
T  42777391 tatgtttctggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatcta 42777490  T
Q  505 ataaggaatttaagctgcttcctcccagccc 535  Q
     ||| ||||| |||||  |||||||||||||    
T  42777491 ctaaagaattcaagctcattcctcccagccc 42777521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 42841522 - 42841429
Alignment:
Q  155 aatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaac 248  Q
    |||||||||||| ||||| ||||||||| ||||||||||| || ||||||||||||| | |||| ||||||||||| | ||||| |||||||||    
T  42841522 aatctttgaagccatttgaatgcgtacataaatcatggtctctattatttgataatcatgattttatgactatgtaccgcaactatttcttaac 42841429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 42782296 - 42782377
Alignment:
Q  142 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||| |||| || ||||||||    
T  42782296 aaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctatttgaaaatccttttttcatga 42782377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 21698753 - 21698870
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 251  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  21698753 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 21698852  T
Q  252 gaatcatccttattatga 269  Q
    | ||||| ||||||||||    
T  21698853 ggatcattcttattatga 21698870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 27174408 - 27174351
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatc 211  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||    
T  27174408 aaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatc 27174351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 40415105 - 40415183
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatc 232  Q
    |||||||||||| | |||||||| |||  ||||||||| || |||||||||||||||   |||||||||||||||||||    
T  40415105 aaatctttgaagaggtttggatgtgtatgcaaatcatgatcgcttttatttgataattcatatttcatgactatgtatc 40415183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 42797219 - 42797141
Alignment:
Q  115 aatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggt 193  Q
    |||||||||||||||| ||||||||  |||||| | ||||||||||||||||||||| |||  ||||  ||||||||||    
T  42797219 aatgatcttttcttctctattctctcaaaattacctattaaatctttgaagcgattttgatatgtacttaaatcatggt 42797141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 31788657 - 31788702
Alignment:
Q  149 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 194  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||    
T  31788657 ccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtc 31788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 41227038 - 41227119
Alignment:
Q  142 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| | ||||||||||| ||||||||| ||||| ||   ||||||||||||||| ||||||| |||| || ||||||||    
T  41227038 aaattaccgattaaatctttaaagcgatttcgatgcatatgtaaatcatggtcccttctatttgaaaatccttttttcatga 41227119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 32031997 - 32032042
Alignment:
Q  149 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 194  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  32031997 ccattaaatctttgaaacgatttgaatgcgtacgcaaattatggtc 32032042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 16920108 - 16920223
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaaga 253  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||| ||||| || ||| |||||||||| ||||||| ||||| |||| |  | || |    
T  16920108 aaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtatcgcaactatttcctttctaata 16920207  T
Q  254 atcatccttattatga 269  Q
    ||||| ||||||||||    
T  16920208 atcattcttattatga 16920223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 7429930 - 7429892
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  7429930 aaatctttgaagcgatttggatgcgtatgcaaatcatgg 7429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 29353370 - 29353318
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 206  Q
    |||||||||||||| |||||||||||| | ||| ||||||| || ||||||||    
T  29353370 aaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttga 29353318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 21375317 - 21375219
Alignment:
Q  125 tcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| |||||| |  ||||||||  |||||||||||||| |||||||||||||  | |||||||||||||| |||||||| ||  ||||||||||||    
T  21375317 tcttctctattctatcgaaattatctcttaaatctttgaagtgatttggatgcgtctataaatcatggtccctcttatttgaaaacatttatttcatga 21375219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 21379382 - 21379311
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||||||||||||||||||||||||| |  ||||||||||| || |||||||| ||   |||||||||||    
T  21379382 ttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatga 21379311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 15157 - 15040
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 251  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  15157 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 15058  T
Q  252 gaatcatccttattatga 269  Q
    | ||||| ||||||||||    
T  15057 ggatcattcttattatga 15040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17193 - 17122
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||||||||||| |||||| ||||||   |||||||||||| || ||| ||||||||  |||||||||||    
T  17193 ttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgataattcttatttcatga 17122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 17013 - 16972
Alignment:
Q  319 ctctttctggtgagaggtttgagaaaagggtcaacttagatt 360  Q
    ||||||||||||||||||||||||| | |||||| |||||||    
T  17013 ctctttctggtgagaggtttgagaataaggtcaaattagatt 16972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 4027058 - 4027110
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 206  Q
    ||||||||||| || |||||||| ||||||||| ||||||| || ||||||||    
T  4027058 aaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttga 4027110  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 48742701 - 48742657
Alignment:
Q  321 ctttctggtgagaggtttgagaaaagggtcaacttagattggcca 365  Q
    ||||||||||||| ||||||||| | |||||| ||||||||||||    
T  48742701 ctttctggtgagacgtttgagaataaggtcaaattagattggcca 48742657  T

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