View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_high_5 (Length: 442)
Name: NF17829_high_5
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 427
Target Start/End: Original strand, 2757819 - 2758241
Alignment:
| Q |
9 |
aggcctaaggaatataactaaatggattttagcattggatattcttcattcaagttcaacatttttt-acaacaaacgcgagaattagcggcaggaaatt |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
2757819 |
aggcctaaggaatataactatatggattttagcattggatattcttcattcaagttcaacatttttttacaacaaacgagagaattagcggcaggaaatt |
2757918 |
T |
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| Q |
108 |
tggtttttagagctggttgtaaccagcgtcaatcctaacttccgatggttgaagaaatggcgcaaaatttgacgccgttnnnnnnnnn--gtaacggtta |
205 |
Q |
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| T |
2757919 |
tggtttttagagctggttgtaaccagcgtcaatcctaacttccgatggttgaagaaatggcgcaaaatttgacgccgttaaaaaaaaaaagtaacggtta |
2758018 |
T |
|
| Q |
206 |
cacacaacggccggcatatgattcatgtcagtgacaac-gacactaaccatatctgaccatataactctactttgttgtattacatcctaaaatatctta |
304 |
Q |
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|| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2758019 |
cagacaacggccggcatatgatttatgtcagtgacaaccgacactaaccatatctgaccatataactctactttgttgtattacatcctaaaatatctta |
2758118 |
T |
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| Q |
305 |
gcatatacttaaaaagttaaatatgattagaaaactcttgaaaatatttttattgcgttaatgcatagccattaaactcaatttaaaatagcatagtgaa |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2758119 |
gcatatacttaaaaagttaaatatgattagaaaactcttgaaaatatttttattgcgttaatgcatatccattaaactcaatttaaaatagcatagtgaa |
2758218 |
T |
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| Q |
405 |
ctatgtcatcttatcttgtttgt |
427 |
Q |
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| T |
2758219 |
ctatgtcatcttatcttgtttgt |
2758241 |
T |
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