View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17829_low_10 (Length: 412)
Name: NF17829_low_10
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 30310962 - 30310808
Alignment:
| Q |
14 |
gaagaagattaaggaattgcagatctgannnnnnnn-ccatgtcacttctccttctaaactcattcgactacacacccaactctttgaagactgttcttc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30310962 |
gaagaagattaaggaattgcagatctgatttttttttccatgtcacttctccttctaaactcattcgactacacacccagctctttgaagactgttcttc |
30310863 |
T |
|
| Q |
113 |
ttaataacgaatctcctaacaactgggtttggtgttgttgttgtgcgtcagtacc |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30310862 |
ttaataacgaatctcctaacaactgggtttgttgttgttgttgtgcgtcagtacc |
30310808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 30310672 - 30310577
Alignment:
| Q |
303 |
tgtgaacaataatctttgtttattaaatatgccannnnnnnatttactttgtgtattttctatgtcaatggttctgtgtagttactttgtttatta |
398 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
30310672 |
tgtgaacaataatctttctttattaaatatgccatttttttatttactttgtgtattttctatgccattggttctgtgtagttactttgtttatta |
30310577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 3713608 - 3713693
Alignment:
| Q |
50 |
ccatgtcacttctccttctaaactcattcgactacacacccaactctttgaagactgttcttcttaataacgaatctcctaacaac |
135 |
Q |
| |
|
|||||| ||||||| |||||||| | ||||| |||||||||| ||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
3713608 |
ccatgttacttctctttctaaacactttcgattacacacccagctcttccaagactgttcttcttaacaacgaatcacctaacaac |
3713693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University