View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17829_low_11 (Length: 369)
Name: NF17829_low_11
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_11 |
 | |
|
| [»] scaffold0035 (3 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
| [»] scaffold0158 (3 HSPs) |
| | |
|
| [»] scaffold0564 (1 HSPs) |
| | |
|
| [»] scaffold1407 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0035 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 97813 - 97521
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
97813 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccccgtgacgcccgtcacgggttcgggagaatcagtcttccccactcccaggaacggtttcca |
97714 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaataataggtccagaaaaggaaacgaaaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
97713 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctata---aataggtctagaaaaggaaaggaaaag |
97617 |
T |
|
| Q |
213 |
ggggagaagtttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtac |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
97616 |
ggggagaagtttttaggcaagcattagaaatt----catagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtac |
97521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 88095 - 87950
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| || |
|
|
| T |
88095 |
cagaccgtcaccaccccgtgacaagcaaactgtcacaccctgtgacgcccgtcacgggttcgggagaatcagtcttgcccactcccaggaacggttttca |
87996 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacac |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87995 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacac |
87950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 87949 - 87828
Alignment:
| Q |
187 |
ataggtccagaaaaggaaacgaaaaaggggagaagtttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttt |
286 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87949 |
ataggtccagaaaaggaaaggaaaagggggagaagtttttaggcaaacattagaaatt----catagctgattgtaatcctaagtttcaagttttccttt |
87854 |
T |
|
| Q |
287 |
tcattcacagtttgatacaatcgtac |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
87853 |
tcattcacagtttgatacaatcgtac |
87828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 18477969 - 18477697
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18477969 |
cagaccgtcaccaccccgtgtcgagcagaccgtcacaccctgtgacgcccgtcatgggttcgggagaatcagtctcccccactcccaggaacggtttcca |
18477870 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaataataggtccagaaaaggaaacgaaaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||| || |||| |||||| |
|
|
| T |
18477869 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgttttttacgaagcttggcctata---aataggtgcagagaa-gaaaggaaaaa |
18477774 |
T |
|
| Q |
213 |
ggggagaag--tttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattc |
292 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18477773 |
ggagagaagtttttttaggcaagcattagaaatt----catagcttattgtaatcctaagtttcaag-tttccttttcattc |
18477697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 18488065 - 18487793
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18488065 |
cagaccgtcaccaccccgtgtcgagcagactgtcacaccctgtgacgcacgtcacgggttcggaagaatcagtctcccccactcccaggaacggtttcca |
18487966 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaataataggtccagaaaaggaaacgaaaaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||| |||| || |||| |||||| |
|
|
| T |
18487965 |
gttttctctcccacttcctccacctgcagaagcatgaccagaacacattttttaggaagcttggcctata---aataggtgcagagaa-gaaaggaaaaa |
18487870 |
T |
|
| Q |
213 |
ggggagaag--tttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattc |
292 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18487869 |
ggagagaagtttttttaggcaagcattagaaatt----catagcatattgtaatcctaagtttcaag-tttccttttcattc |
18487793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 186158 - 186446
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
186158 |
cagaccgtcaccaccccgtgacgagcagactgtcacaccctgtgacgcccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttcca |
186257 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaataataggtccagaaaaggaaacgaaaaa |
212 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |||||| ||||||||||| |||| |||||||||||||| ||||||||||| | ||||| | | |
|
|
| T |
186258 |
gttttctctcccactccctgcacctgcagaggcacgatcagaacacgttgttaaagaagcttggcctata---aataggtccag-agaggaagag-ctga |
186352 |
T |
|
| Q |
213 |
ggggagaagtttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtac |
312 |
Q |
| |
|
|| |||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
186353 |
ggagagaagcttttagacaagcattagaaatt----catagccgattgtaatcctaagtttca--gtttccttttcattcacagtttgatacaatcgtac |
186446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 31183 - 31020
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
31183 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctgtgacgcccgtcacgggttcgggagaatcagtctcccccacttccaggaacggtttcca |
31084 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttgg |
176 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |||||||| || |||| |||||||| |
|
|
| T |
31083 |
gttttctctcccactccctccacctgcagaggcacgatcagaacacattgttaaagaagcttgg |
31020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 36651 - 36363
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
36651 |
cagaccgtcaccaccccgtgacgataagaccgtcgcaccctgtgacgcccgtcatgggttcgggagaatcagtctgccccacttccaggaacggtttcca |
36552 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaataataggtccagaaaaggaaacgaaaaa |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| || || ||||| | || |||||||||||||| ||||||||||| | ||||| | |
|
|
| T |
36551 |
gttttctctcccactccctccacctgcagaggcacgatcataatacgttgtaaaagaagcttggcctata---aataggtccag-agaggaagag-ctgc |
36457 |
T |
|
| Q |
213 |
ggggagaagtttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtac |
312 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
36456 |
ggagagaagtttttaggcaagcattagaaatt----cataactgattgtaatcctaagtttca--gtttccttttcattcacagtacgatacaatcgtac |
36363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 28730 - 28641
Alignment:
| Q |
216 |
gagaagtttttaggcaagcattagaaatttatatatagctgattgtaatcctaagtttcaagttttccttttcattcacagtttgatacaatcgtac |
312 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
28730 |
gagaagtttttaggcaagctttagaaatgcataa----ctgattgtaatcctaagtttca--gtttccttttcatttacagttt-atacaatcgtac |
28641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 28386028 - 28386201
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| |||| |||||||||||| | | ||||||||||| |
|
|
| T |
28386028 |
cagaccgtcaccaccccgtgacgagcagatcgtcacaccctgtgacgcccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttcca |
28386127 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaata |
186 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
28386128 |
gatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttccaatgaagcttggcctataaata |
28386201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 14223472 - 14223645
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| |||| |||||||||||| | | ||||||||||| |
|
|
| T |
14223472 |
cagaccgtcaccaccccgtgacgagcagatcgtcacaccctgtgacgtccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttcca |
14223571 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaata |
186 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
14223572 |
gatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttccaatgaagcttggcctataaata |
14223645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 14233567 - 14233740
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| |||| |||||||||||| | | ||||||||||| |
|
|
| T |
14233567 |
cagaccgtcaccaccccgtgacgagcagatcgtcacaccctgtgacgtccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttcca |
14233666 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaata |
186 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
14233667 |
gatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttccaatgaagcttggcctataaata |
14233740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 709 - 536
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| |||| |||||||||||| | | ||||||||||| |
|
|
| T |
709 |
cagaccgtcaccaccccgtgacgagcagatcgtcacaccctgtgacgtccgtcacgggttcggaagaagcagtctcccccattatctgaaacggtttcca |
610 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaacacgtttttaagaaagcttggcctataaata |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| ||||||| || |||||||||||||||||| |
|
|
| T |
609 |
tatttctctcccactcgctccacctgcagaagcacgatcagagcacgtttccaatgaagcttggcctataaata |
536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1407 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold1407
Description:
Target: scaffold1407; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 1550 - 1408
Alignment:
| Q |
13 |
cagaccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttcca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||| |||| |||||||||||| | | ||||||| ||| |
|
|
| T |
1550 |
cagaccgtcaccaccccgtgacgagcagatcgtcacaccctgtgacgtccgtcacgggttcggaagaagcagtctcccccattatctgaaacggttccca |
1451 |
T |
|
| Q |
113 |
gttttctctcccacttcctccacctgcagaagcacgaccagaa |
155 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
1450 |
gttttctctcccactcgctccacctgcagaagcacgatcagaa |
1408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 32300 - 32437
Alignment:
| Q |
17 |
ccgtcaccaccccgtgacgagcagaccgtcacaccctatgacgcccgtcacaggttcgggagaatcagtctcccccactcccaagaacggtttccagttt |
116 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||| ||||| ||||||| ||||||| |||| |||||||||||| | | ||| |||||| |||| |
|
|
| T |
32300 |
ccgtcaccaccc-gtgacgagcagatcgtcacaccctgtgacgtccgtcacgggttcggaagaagcagtctcccccattatctgaaactgtttccggttt |
32398 |
T |
|
| Q |
117 |
tctctcccacttcctccacctgcagaagcacgaccagaa |
155 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
32399 |
tctctcccactcgctccacctgcagaagcacgatcagaa |
32437 |
T |
|
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