View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17829_low_12 (Length: 355)

Name: NF17829_low_12
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17829_low_12
NF17829_low_12
[»] chr1 (11 HSPs)
chr1 (25-278)||(30367319-30367573)
chr1 (59-278)||(13069402-13069622)
chr1 (50-277)||(13205208-13205436)
chr1 (19-253)||(13007906-13008141)
chr1 (17-275)||(13095115-13095374)
chr1 (19-253)||(14708147-14708382)
chr1 (17-149)||(13010949-13011081)
chr1 (25-231)||(13130552-13130759)
chr1 (17-231)||(13162237-13162452)
chr1 (17-169)||(13067502-13067650)
chr1 (50-195)||(13101737-13101882)
[»] chr6 (2 HSPs)
chr6 (25-278)||(31376225-31376476)
chr6 (151-274)||(31385497-31385623)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 278
Target Start/End: Complemental strand, 30367573 - 30367319
Alignment:
Q  25 aatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaaggtatct 124  Q
    ||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  30367573 aatttctctaagatcactaatcttatttggaagccaattagaatcaaatccaaatacaataatgcagatgctgtcaaaagtgaacctattcaagatatct 30367474  T
Q  125 tgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagctt-ttttgactagtttgttggaacatgttcttga 223  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  30367473 tgcaagtccacctcagaacctgcttcagatacatcattaataaatggtagtaggaatttctccagcttttttttactagtttgttggaacaagttcttga 30367374  T
Q  224 agcttttcattttcataattgaatgaaacactgtcctcttctgtatccatacgtg 278  Q
    |||||||| |||| | |||||||||||||| || |||||||| | ||||||||||    
T  30367373 agcttttccttttgagaattgaatgaaacattgccctcttctctttccatacgtg 30367319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 278
Target Start/End: Complemental strand, 13069622 - 13069402
Alignment:
Q  59 caattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaaggtatcttgcaagtccacctcagaacctgcttgagatgcat 158  Q
    |||||||||||||||||||||  |||| |||||||||| ||||||||||||||| |||||| ||| | || |||||||| || ||||  || |||| |||    
T  13069622 caattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccacctgagcacctatttcagatacat 13069523  T
Q  159 cattaataaatggtagtaggaatttctccagcttttt-tgactagtttgttggaacatgttcttgaagcttttcattttcataattgaatgaaacactgt 257  Q
    |||||| ||||||||||||| | |||||||||||||| |   ||||||||||||| | |||||||||| ||||| |||| | || ||||||||||| |||    
T  13069522 cattaagaaatggtagtaggtagttctccagctttttcttcatagtttgttggaagaagttcttgaaggttttccttttaagaaatgaatgaaacattgt 13069423  T
Q  258 cctcttctgtatccatacgtg 278  Q
    |||||  ||| ||||||||||    
T  13069422 cctctgttgtttccatacgtg 13069402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 50 - 277
Target Start/End: Original strand, 13205208 - 13205436
Alignment:
Q  50 tttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaaggtatcttgcaagtccacctcagaacctgctt 149  Q
    |||||| | |||||||||||||||||||||  |||| |||||||||| ||||||||||||||| |||||| ||| | || ||||| || || ||||  ||    
T  13205208 tttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctatcaaaagtgaacctactcaaggcatcctccaggtccagctgagcacctattt 13205307  T
Q  150 gagatgcatcattaataaatggtagtaggaatttctccagcttttt-tgactagtttgttggaacatgttcttgaagcttttcattttcataattgaatg 248  Q
     |||| |||||| || ||||||||||||| | |||||||||||||| |   ||||||||||||| | |||||||||| ||||| |||| | || ||||||    
T  13205308 cagatacatcatcaagaaatggtagtaggtagttctccagctttttcttcatagtttgttggaagaagttcttgaaggttttccttttgagaaatgaatg 13205407  T
Q  249 aaacactgtcctcttctgtatccatacgt 277  Q
    ||||| ||||||||  ||| |||||||||    
T  13205408 aaacattgtcctctgttgtttccatacgt 13205436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 13007906 - 13008141
Alignment:
Q  19 ataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaag 118  Q
    ||||||||||| ||| || | | ||| ||| |||||| | |||||||||||||||||||||  |||| |||||||||||||||||||||||||| |||||    
T  13007906 ataagcaatttctcttagctcattaaacttgtttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactcaag 13008005  T
Q  119 gtatcttgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagcttttt-tgactagtttgttggaacatgt 217  Q
    | ||| | || |||||||| || ||||  || |||| ||||||||| ||||||||||| | | ||||||| |||||| |   ||||||||||||| | ||    
T  13008006 gcatcctccaggtccacctgagcacctatttcagatacatcattaagaaatggtagtaagcagttctccacctttttcttcatagtttgttggaaaaagt 13008105  T
Q  218 tcttgaagcttttcattttcataattgaatgaaaca 253  Q
    |||||||| ||||| |||| | || |||||||||||    
T  13008106 tcttgaaggttttccttttgagaaatgaatgaaaca 13008141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 13095115 - 13095374
Alignment:
Q  17 ttataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattca 116  Q
    ||||||| ||||| | |||| | | ||| ||| |||||| | ||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||| |    
T  13095115 ttataaggaatttctataaggtgattaaacttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaa 13095214  T
Q  117 aggtatcttgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagctt-ttttgactagtttgttggaacat 215  Q
    ||| ||||||||| ||||||| ||  ||||||| |||| ||||||||| ||||||||  ||| | ||||||| ||| || ||| | | ||||| || |||    
T  13095215 aggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttcttctgaatggattgttcgaccat 13095314  T
Q  216 gttcttgaagcttttcattttcataattgaatgaaacactgtcctcttctgtatccatac 275  Q
    |||||||||||||||| ||   | |||| ||||||||| |||| ||| |||| |||||||    
T  13095315 gttcttgaagcttttccttccaagaattaaatgaaacattgtcttctcctgtttccatac 13095374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 14708147 - 14708382
Alignment:
Q  19 ataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaag 118  Q
    ||||| ||||| |||||| | ||||| ||| ||||||   ||||| |||||||||||||||| |||  || |||||||||||||||||||||||||||||    
T  14708147 ataagaaatttctctaagctcactaaacttgtttggaaaacaatttggatcaaatccaaatacaatggtgaagatgctgtcaaaagtgaacctattcaag 14708246  T
Q  119 gtatcttgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagt-aggaatttctccagcttttttgactagtttgttggaacatgt 217  Q
      |||||| || ||||||| || |||| |||  ||| ||| ||||| |||||||||| || |||||  | | || || ||| | ||||||||||| | ||    
T  14708247 acatcttgtaaatccacctgagcacctacttctgatacatgattaagaaatggtagtaagcaattttccaacctcttctgaatggtttgttggaagaagt 14708346  T
Q  218 tcttgaagcttttcattttcataattgaatgaaaca 253  Q
    |||||||||||||| |||| |||||| |||||||||    
T  14708347 tcttgaagcttttctttttgataattaaatgaaaca 14708382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 13010949 - 13011081
Alignment:
Q  17 ttataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattca 116  Q
    ||||||||||||| |||||| | ||||| ||| |||||| | |||||||||||||||||||||| ||   |||||| ||||||||| || |||||| |||    
T  13010949 ttataagcaatttctctaagctcactaaacttgtttggaaggcaattaggatcaaatccaaatacaacggtgcagaggctgtcaaatgttaacctactca 13011048  T
Q  117 aggtatcttgcaagtccacctcagaacctgctt 149  Q
    ||| ||||||||||||||||| |||||||||||    
T  13011049 aggaatcttgcaagtccacctgagaacctgctt 13011081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 231
Target Start/End: Original strand, 13130552 - 13130759
Alignment:
Q  25 aatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaaggtatct 124  Q
    ||||| |||||| | | ||| ||| |||||| | ||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||| |||| ||||    
T  13130552 aatttttctaagctgattaaacttgtttggaaggcaatttggatcaaatccgaataaaatcatgcagctgctatcaaaggtgaacctattaaaggcatct 13130651  T
Q  125 tgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagctt-ttttgactagtttgttggaacatgttcttga 223  Q
    ||||| ||||| | ||  ||||||| |||| ||||||||| ||||||||  ||| | ||||||| ||| || ||| | | ||||| ||||||||||||||    
T  13130652 tgcaaatccacatgagctcctgcttcagatacatcattaagaaatggtatcaggtagttctccaccttcttctgaatggattgttcgaacatgttcttga 13130751  T
Q  224 agcttttc 231  Q
    ||||||||    
T  13130752 agcttttc 13130759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 13162237 - 13162452
Alignment:
Q  17 ttataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattca 116  Q
    ||||||| ||||| |||||| | | ||| ||| |||||| | ||||| |||||||||||||||||||| | |||| |||| ||||| ||||||||||| |    
T  13162237 ttataaggaatttctctaagctgattaaacttgtttggaaggcaatttggatcaaatccaaataaaatcaggcagctgctatcaaaggtgaacctattaa 13162336  T
Q  117 aggtatcttgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagctt-ttttgactagtttgttggaacat 215  Q
    ||| ||||||||| ||||||| ||  ||||||| |||| ||||||||| |||||||| |||  | |  |||| ||| || ||| | |  |||||||||||    
T  13162337 aggcatcttgcaaatccacctgagctcctgcttcagatacatcattaagaaatggtattagatagtcgtccaccttcttctgaatggaatgttggaacat 13162436  T
Q  216 gttcttgaagcttttc 231  Q
    ||||||||||||||||    
T  13162437 gttcttgaagcttttc 13162452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 13067650 - 13067502
Alignment:
Q  17 ttataagcaatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattca 116  Q
    ||||| ||||||| |||||| | | ||| |||||||||| | |||||||||||||||||||||| |||  |||||| ||| |    |||||||||| |||    
T  13067650 ttatacgcaatttctctaagctcattaaacttatttggaaggcaattaggatcaaatccaaatataatggtgcagaggctat----agtgaacctactca 13067555  T
Q  117 aggtatcttgcaagtccacctcagaacctgcttgagatgcatcattaataaat 169  Q
    ||| ||||||||||||||||| ||||||||||| |||  |||||| |||||||    
T  13067554 aggcatcttgcaagtccacctgagaacctgcttcagacacatcatcaataaat 13067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 50 - 195
Target Start/End: Original strand, 13101737 - 13101882
Alignment:
Q  50 tttggatgccaattaggatcaaatccaaataaaataatgcagatgctgtcaaaagtgaacctattcaaggtatcttgcaagtccacctcagaacctgctt 149  Q
    |||||| | |||||||||||||||||||||  |||| |||||||||||||||||||||||||| | |||  ||| | || |||||| | || ||||  ||    
T  13101737 tttggaaggcaattaggatcaaatccaaatgcaatagtgcagatgctgtcaaaagtgaacctactaaagacatcctccaggtccacatgagcacctattt 13101836  T
Q  150 gagatgcatcattaataaatggtagtaggaatttctccagcttttt 195  Q
     |||| ||||||||| ||| ||||||||| | ||||||||||||||    
T  13101837 cagatacatcattaagaaacggtagtaggcacttctccagcttttt 13101882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 31376225 - 31376476
Alignment:
Q  25 aatttatctaagattactaatcttatttggatgccaattaggatcaaatccaaataaaataa-tgcagatgctgtcaaaagtgaacctattcaaggtatc 123  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  31376225 aatttctctaagatcactaatcttatttggaagccaattaggatcaaatccaaatacaataaatgcagatgctgtcaaaagtgaacctattcaagatatc 31376324  T
Q  124 ttgcaagtccacctcagaacctgcttgagatgcatcattaataaatggtagtaggaatttctccagc--ttttttgactagtttgttggaacatgttctt 221  Q
    ||||||||||||||||||||| |||| |||   ||  | ||||||||||||||||||||||||||||  ||||||||||||||||||| |||| ||||||    
T  31376325 ttgcaagtccacctcagaaccagcttcaga---at--tgaataaatggtagtaggaatttctccagcttttttttgactagtttgttgaaacaagttctt 31376419  T
Q  222 gaagcttttcattttcataattgaatgaaacactgtcctcttctgtatccatacgtg 278  Q
    |||||||||| |||| | |||||||||||||| ||||||||||| | ||||||||||    
T  31376420 gaagcttttccttttgagaattgaatgaaacattgtcctcttctctttccatacgtg 31376476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 274
Target Start/End: Complemental strand, 31385623 - 31385497
Alignment:
Q  151 agatgcatcattaataaatggtagtaggaatttctccagcttttttg---actagtttgttggaacatgttcttgaagcttttcattttcataattgaat 247  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    ||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  31385623 agatacatcattaataaatggtagtaggaatttctccagcttttttttttactagtttgatggaacatgttcttgaagcttttcgttttcagaattgaat 31385524  T
Q  248 gaaacactgtcctcttctgtatccata 274  Q
    |||||| |||||| |||| | ||||||    
T  31385523 gaaacattgtccttttctatttccata 31385497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University