View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_13 (Length: 343)
Name: NF17829_low_13
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 27489430 - 27489121
Alignment:
| Q |
19 |
aatattctttggagaattactatacaatttctttacgtattttttcaacacagtcgacttattgtctcataagtgcaacttagtaaaaaataatttacnn |
118 |
Q |
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| T |
27489430 |
aatattctttggagaattactatacaatttctttacgtattttttcaacacagtcgacttattgtctcataagtgcaacttagtaaaaaataatttacaa |
27489331 |
T |
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| Q |
119 |
nnnnnnnn-gatagtaaacatttgattacaggtttcaatccataatactcctcttctccgcaattgtttgatattgctaaattctttgagatnnnnnnnc |
217 |
Q |
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| T |
27489330 |
aaaaaaaaagatagtaaacatttgattacaggtttcaatccataatactcctcttctccgcaattgtttgatattgctaagttctttgagataaaaaaac |
27489231 |
T |
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| Q |
218 |
tgaacttattacttttcattatggttaattgatgatcaaaatttacaacaattttaaagatttaatcatatataagaatttcatcttgatccattaagcg |
317 |
Q |
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| T |
27489230 |
tgaactta---ctttttattatggttaattgatgatcaaaatttacaacaattttaaagatttaatcatatataagaatttcatcttgatccattaagcg |
27489134 |
T |
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| Q |
318 |
aaatattcatttc |
330 |
Q |
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| T |
27489133 |
aaatattcatttc |
27489121 |
T |
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