View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_17 (Length: 324)
Name: NF17829_low_17
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 135 - 320
Target Start/End: Original strand, 32451024 - 32451209
Alignment:
| Q |
135 |
gtatgtacattcattttaactttannnnnnncttcttgacatggtgtgtaagatcgtatatttgttattaacattgatccaacgtaaattaagtgtggct |
234 |
Q |
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| T |
32451024 |
gtatgtacattcattttaactttatttttttcttcttgacatggtgtgtaagatcgtatatttgttattaacattgatccaacgtaaattaagtgtggct |
32451123 |
T |
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| Q |
235 |
tggcacggtggaaggtaagcatatagagtgaatttgtctaaatttgctattgatgctagtgttattgtttatctgatgatgtccat |
320 |
Q |
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| T |
32451124 |
tggcacggtggaaggtaagcatatagagtgaatttgtctaaatttgctattgatgctagtgttattgtttatcctatgatgtccat |
32451209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 89
Target Start/End: Original strand, 32450949 - 32450978
Alignment:
| Q |
60 |
catagtaatatttcttttgacatcacgaat |
89 |
Q |
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| T |
32450949 |
catagtaatatttcttttgacatcacgaat |
32450978 |
T |
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