View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17829_low_2 (Length: 639)
Name: NF17829_low_2
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 14631006 - 14630533
Alignment:
| Q |
1 |
aacaatatgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacat |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14631006 |
aacaaaatgcaacgtgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacat |
14630907 |
T |
|
| Q |
101 |
gactacnnnnnnntatgatttgaattgcacattctcttttaatttatcaaaaacctatgtatcatgttgtttataatatccagttgtgtaatagattgtg |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
14630906 |
gactacacaaaaatatgatttgaattgcacattctcttttaatttatcagaaacctatgtatcatgt-gtttataatatccagttgtgtaacagattgtg |
14630808 |
T |
|
| Q |
201 |
ttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactccgtcaatatcgttgtcattgaattgttcttttcaaatctg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||| |
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| T |
14630807 |
ttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactccattaatatcgttgtcattgaattgttcttttcaagtctg |
14630708 |
T |
|
| Q |
301 |
ttttctcttaactccttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgttgagcatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14630707 |
ttttctcttaactccttttggaagttaactttatcttatgataataaattgacatcctccttttattgcaaagaatataagaatgccattgttgagcatt |
14630608 |
T |
|
| Q |
401 |
ttgttaattgacttgatatgttatttaaactttagaactatgggcatttaacttctaatatttgacttcctttta |
475 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14630607 |
ttgttaattgacttgatatgttatttagactttagaactatgggcgtttaacttctaatatttgacttcctttta |
14630533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 16641601 - 16641374
Alignment:
| Q |
1 |
aacaatatgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacat |
100 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
16641601 |
aacaaaatgcaacgtgataagcaggaagccaacattccaaccgagagatggaaaatcaaagagaaccggaaaaagactgtgaagaaaatgtaagaaacat |
16641502 |
T |
|
| Q |
101 |
gactacnnnnnnntatgatttgaattgcacattctcttttaatttatcaaaaacctatgtatcatgttgtttataatatccagttgtgtaatagattgtg |
200 |
Q |
| |
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| |||| || ||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16641501 |
gcctacagaaaaatacgatttaaattgcatattctcttttaacttatcaaagacctatgtatcatgttgtttataatatccagttgtgtaacagattgtg |
16641402 |
T |
|
| Q |
201 |
ttaagcataagttcaaatgttaaaatct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
16641401 |
ttaagcataagttcaaatgttaaaatct |
16641374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 447 - 624
Target Start/End: Complemental strand, 16632411 - 16632234
Alignment:
| Q |
447 |
tttaacttctaatatttgacttccttttacttataaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatctac |
546 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16632411 |
tttaacttctaatatttgactttcttttacttataaaaactttgaattctttatgtttacaacattttctgaagctcttcaatattctgacatgatctac |
16632312 |
T |
|
| Q |
547 |
catatgtgtaaatgtaatatattcgatgcagcttggaagagtttatcaagcatgatcatcttaatgacaaatcaagtt |
624 |
Q |
| |
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||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |
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|
| T |
16632311 |
catctgtttaaatgtaatataatcgatgcagcttggaagagttaatcaagcatggtcatcttaaagacaaatcaagtt |
16632234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 506 - 624
Target Start/End: Complemental strand, 14630532 - 14630414
Alignment:
| Q |
506 |
taacattttctgaagctcttcaatattctgacatgatctaccatatgtgtaaatgtaatatattcgatgcagcttggaagagtttatcaagcatgatcat |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
14630532 |
taacattttctgaagctcttcaatattctgacatgatctaccatctgtgtaaatgtaatatatttgatgcagcttggaagagtttatcaagcatggccat |
14630433 |
T |
|
| Q |
606 |
cttaatgacaaatcaagtt |
624 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
14630432 |
cttaatgacaaatcaagtt |
14630414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 294 - 403
Target Start/End: Complemental strand, 16641379 - 16641270
Alignment:
| Q |
294 |
aaatctgttttctcttaactccttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgtt |
393 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||| |
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|
| T |
16641379 |
aaatctgttttctctcaactctttttggaagttaactttatcttatgataataaactgacattctccttatattgcaaagaatataagaatgtcattgtt |
16641280 |
T |
|
| Q |
394 |
gagcattttg |
403 |
Q |
| |
|
|| ||||||| |
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|
| T |
16641279 |
gatcattttg |
16641270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 16632510 - 16632421
Alignment:
| Q |
7 |
atgcaacgtgataagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
16632510 |
atgcaacgtgataagcaagaagccaacattccaaccgagagatggaaaatcaaagagaaccggaacagggttatgaagaaaatgtaagaa |
16632421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 520 - 624
Target Start/End: Complemental strand, 16641242 - 16641138
Alignment:
| Q |
520 |
gctcttcaatattctgacatgatctaccatatgtgtaaatgtaatatattcgatgcagcttggaagagtttatcaagcatgatcatcttaatgacaaatc |
619 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| ||| ||||||||||||| |||| ||||| |||||||||| |||| ||||| |||||||| ||||||||| |
|
|
| T |
16641242 |
gctcttcactattctgacttgatctaccatctgtttaaatgtaatataatcgacgcagcatggaagagttaatcaggcatggtcatcttactgacaaatc |
16641143 |
T |
|
| Q |
620 |
aagtt |
624 |
Q |
| |
|
||||| |
|
|
| T |
16641142 |
aagtt |
16641138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 15621136 - 15621187
Alignment:
| Q |
197 |
tgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagca |
248 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
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|
| T |
15621136 |
tgtgttaagcataagttcaaacgttaaaatctttttgttttctactcgagca |
15621187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 15644905 - 15644956
Alignment:
| Q |
197 |
tgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagca |
248 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
15644905 |
tgtgttaagcataaattcaaacattaaaatctttttgttttctactcgagca |
15644956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 480 - 544
Target Start/End: Complemental strand, 16620001 - 16619938
Alignment:
| Q |
480 |
taaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatct |
544 |
Q |
| |
|
|||||||||| |||||||||||||| || | |||| ||| ||||||||||||||||||| |||| |
|
|
| T |
16620001 |
taaaaacttttaattctttatgtttatagc-ttttaggaacctcttcaatattctgacattatct |
16619938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 480 - 567
Target Start/End: Complemental strand, 38880845 - 38880759
Alignment:
| Q |
480 |
taaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattctgacatgatctaccatatgtgtaaatgtaatata |
567 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||| ||||||| |||||||||||||||||||||| ||| ||| ||||||||||||| |
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|
| T |
38880845 |
taaaaacttctaattctttatgtttataac-ttttatgaagctgttcaatattctgacatgatctatcatttgtttaaatgtaatata |
38880759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 38881224 - 38881149
Alignment:
| Q |
185 |
tgtgtaatagattgtgttaagcataagttcaaatgttaaaatcttcttgttttctacttgagcacttgcaatactc |
260 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||| ||| |||| |
|
|
| T |
38881224 |
tgtgtaacagattgtgttaagcataagtccaaatgttgaaatctttttgttttctatttgagcacttacaagactc |
38881149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 38881353 - 38881224
Alignment:
| Q |
18 |
taagcaagaagccaacattccaacctagagatggaaaatcaaagagaaccggaaaagggttgtgaagaaaatgtaagaaacatgactacnnnnnnntatg |
117 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||| |||| |||| |
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|
| T |
38881353 |
taagcaagttgccaacatcgcgaccgagagatggaaaacgaaagagtttcggaaaaggattgtgatgaacgtgtaagaaacatgcctacacaaaaatatg |
38881254 |
T |
|
| Q |
118 |
atttgaattgcacattctcttttaatttat |
147 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| |
|
|
| T |
38881253 |
atttgaattgtgcattttcttttagtttat |
38881224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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