View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_21 (Length: 284)
Name: NF17829_low_21
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 55145319 - 55145061
Alignment:
| Q |
17 |
tgcctaatgctattattttcaattgaagaatatagtaaacttaaaacatttataccatttcttttagtaattttacaaaaatatcattaatggtaatgtg |
116 |
Q |
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| T |
55145319 |
tgcctaatgttattattttcaattgaagaatatagtaaacttaaaacatttataccatttcttttagtaattttacaaaaatatcattaatggtaatatg |
55145220 |
T |
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| Q |
117 |
aaagtttaacagtaataaacttactgtgatggacatgctgaagcttctggaaaaatcattggtggcattgggggtaggttgaaatgtggaggaggagaag |
216 |
Q |
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| T |
55145219 |
aaaggttaacagtaataaacttactgtgatggacatgctgaagcttctggaaaaatca---------ttgggggtaggttgaaatgtggaggaggagaag |
55145129 |
T |
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| Q |
217 |
aaatgggtggtggtggggatgggttggaagatgttgagcagtattgcataggttgagaaggctgagca |
284 |
Q |
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| T |
55145128 |
aaatgggtggtggtggggatgggttggaagatgttgagcagtattgcataggttgagaaggctgagca |
55145061 |
T |
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