View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_22 (Length: 268)
Name: NF17829_low_22
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 49352772 - 49352536
Alignment:
| Q |
18 |
tacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaa |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352772 |
tacacaaactgaatgttcatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaa |
49352673 |
T |
|
| Q |
118 |
aatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352672 |
aatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatc |
49352573 |
T |
|
| Q |
218 |
ttctttttgtggtaaattccaaatctcactgtctctg |
254 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
49352572 |
ttctttttgtggtaaattccaaatctcactgtctctg |
49352536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 49341394 - 49341164
Alignment:
| Q |
18 |
tacacaaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaa |
117 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
49341394 |
tacagaaactgaatgctaatatcttccaaggttttacccatgtttggtggtggaagaaaaccaaatgccacccatagcacactaacatcaaaattaataa |
49341295 |
T |
|
| Q |
118 |
aatcaaagttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatc |
217 |
Q |
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| T |
49341294 |
atggaaagtacttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgtc |
49341197 |
T |
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| Q |
218 |
ttctttttgtggtaaattccaaatctcactgtc |
250 |
Q |
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|||||||||||||||| |||||| |||||||| |
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| T |
49341196 |
atctttttgtggtaaatcccaaatttcactgtc |
49341164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 19030726 - 19030639
Alignment:
| Q |
23 |
aaactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaa |
110 |
Q |
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|||||||||| |||||||| ||||||||||||| || ||||| | |||||||||||||||||| |||||| |||| |||||||||| |
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| T |
19030726 |
aaactgaatgctaatatctaccaaggttttacctctgtttggttgtggaagaaaaccaagtgcctcccataacacatgaacatgaaaa |
19030639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 32783503 - 32783733
Alignment:
| Q |
24 |
aactgaatgttaatatcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaa |
123 |
Q |
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||||||||| || || ||||||||||||||||||| |||||||| |||||| |||||| || |||| |||| ||||||| | ||||| ||| || |
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| T |
32783503 |
aactgaatgctagtaccttccaaggttttacccctgtttggtggcagaagaacaccaagcacctcccaaagcatcctaacatccatattagtaaatgtaa |
32783602 |
T |
|
| Q |
124 |
agttcttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttcttt |
223 |
Q |
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||| ||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
32783603 |
agtccttttgaaagagggagaagcaagtaaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttcttt |
32783702 |
T |
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| Q |
224 |
ttgtggtaaattccaaatctcactgtctctg |
254 |
Q |
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||| |||||||||||||| |||||||||||| |
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| T |
32783703 |
ttgaggtaaattccaaatttcactgtctctg |
32783733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 29751144 - 29750932
Alignment:
| Q |
38 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
137 |
Q |
| |
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||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | ||||| ||| | |||| ||| ||||| |
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| T |
29751144 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagaataattactaaagtggaagtcttttacaaag |
29751045 |
T |
|
| Q |
138 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
237 |
Q |
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|| |||||||| ||||||||| |||||||||| || ||||| |||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
29751044 |
agggagaagcaggcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattcc |
29750945 |
T |
|
| Q |
238 |
aaatctcactgtc |
250 |
Q |
| |
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|||||||| |||| |
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| T |
29750944 |
aaatctcattgtc |
29750932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 29602150 - 29602362
Alignment:
| Q |
38 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
137 |
Q |
| |
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||||||||||||||||||| | |||||| ||||||||| |||| ||| |||| |||||| | ||| | || || ||| | |||| ||||| ||| |
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| T |
29602150 |
atcttccaaggttttacccttgtttggtgatggaagaaaatcaagagcctcccaaagcacagtgacagtataagtaacaaatttgaagtctttttcgaag |
29602249 |
T |
|
| Q |
138 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
237 |
Q |
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|| |||||||| ||||||||| ||||||||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||| |
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| T |
29602250 |
agggagaagcaggcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattcc |
29602349 |
T |
|
| Q |
238 |
aaatctcactgtc |
250 |
Q |
| |
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|||||||| |||| |
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| T |
29602350 |
aaatctcattgtc |
29602362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 38 - 250
Target Start/End: Complemental strand, 29744111 - 29743899
Alignment:
| Q |
38 |
atcttccaaggttttacccctacttggtggcggaagaaaaccaagtgccacccatagcacactaacatgaaaattagaaaaatcaaagttcttttcaaag |
137 |
Q |
| |
|
||||||||||||||||||| | |||||| || |||| | |||| ||| |||| |||||| | |||||| |||| ||| |||||| ||| ||||| |
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| T |
29744111 |
atcttccaaggttttacccttgtttggtgatgggagaagatcaagagcctcccaaagcacagtgacatgattattactaaatacaaagtcttttacaaag |
29744012 |
T |
|
| Q |
138 |
agagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattcc |
237 |
Q |
| |
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|| |||||||| ||||||||| |||| |||||||| ||||| |||||| |||||||||||| | |||||||||| ||||||| ||||||||||||||||| |
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| T |
29744011 |
agggagaagcaggcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattcc |
29743912 |
T |
|
| Q |
238 |
aaatctcactgtc |
250 |
Q |
| |
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|||||||| |||| |
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|
| T |
29743911 |
aaatctcattgtc |
29743899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 35158171 - 35158050
Alignment:
| Q |
129 |
ttttcaaagagagagaagcaagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtg |
228 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | || |||||||| || |||||||| | |
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|
| T |
35158171 |
ttttcaaagagggagaagcaagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcg |
35158072 |
T |
|
| Q |
229 |
gtaaattccaaatctcactgtc |
250 |
Q |
| |
|
||||||||||||||||| |||| |
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|
| T |
35158071 |
gtaaattccaaatctcattgtc |
35158050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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