View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_23 (Length: 236)
Name: NF17829_low_23
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 4904161 - 4904375
Alignment:
| Q |
16 |
ttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctc |
115 |
Q |
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| T |
4904161 |
ttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctc |
4904260 |
T |
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| Q |
116 |
gtcgcagaatcctattaaagatatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgccaaatctaagtgtcatc |
215 |
Q |
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| T |
4904261 |
gtcgcagaatcctattaaagatatcaaattagggtgatgaagttggctgtggagttcaattaccttcttgaacatccaatcgcccaatctaagtgtcatc |
4904360 |
T |
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| Q |
216 |
ctctcctatgctact |
230 |
Q |
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|||||| |||||||| |
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| T |
4904361 |
ctctccaatgctact |
4904375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 5822168 - 5821991
Alignment:
| Q |
16 |
ttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctc |
115 |
Q |
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|||||||||||||||||||||| | || |||||||| ||| |||||||| | ||| ||||| ||||||||||||||||| | ||||||||||||||| | |
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| T |
5822168 |
ttttcttccatgagagtgattccatattccttgaacgtaactgatcatacaaagatccatttaacatgtactcatacacaagaattttctcatctttatg |
5822069 |
T |
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| Q |
116 |
gtcgcagaatcctattaaagatatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatcca |
193 |
Q |
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| T |
5822068 |
atcacagaatcctataaaagacctcaaattcgggtgatgaagcttactgtggagttcaatttccttcttgaacttcca |
5821991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 4908085 - 4908262
Alignment:
| Q |
16 |
ttttcttccatgagagtgattctagatcccttgaacataagtgatcatagagagaaccattgaacatgtactcatacactataattttctcatctttctc |
115 |
Q |
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||||||||||||| | |||||| | |||||| || || ||||||||||||||| |||||| |||||||||||||||| | ||||||||||| || | |
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| T |
4908085 |
ttttcttccatgacaatgattccatatccctcaaaagtaggtgatcatagagagagccattggacatgtactcatacacaagaattttctcatacttgtg |
4908184 |
T |
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| Q |
116 |
gtcgcagaatcctattaaagatatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaacatcca |
193 |
Q |
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| T |
4908185 |
gtcacagaatcctataaaagacgtcaaatttgggtgatgaagctggcagttgagttcaatttccttcttgaacttcca |
4908262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 4921863 - 4921711
Alignment:
| Q |
42 |
tcccttgaacataagtgatcatagagagaaccattgaacatgtactc------atacactataattttctcatctttctcgtcgcagaatcctattaaag |
135 |
Q |
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||||||||||||||||||||| |||||| ||||||| ||| | || |||||| | ||||||||||| ||| | ||| || |||||||| |||| |
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| T |
4921863 |
tcccttgaacataagtgatcacggagagagccattgaccatttcatcttttttatacacgagaattttctcatttttttggtcacaaaatcctatcaaag |
4921764 |
T |
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| Q |
136 |
atatcaaattcgggtgatgaagttggctgtggagttcaattaccttcttgaac |
188 |
Q |
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|||||||||| || ||| || |||| ||||||||||||| | ||||||||| |
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| T |
4921763 |
atatcaaatttggatgacaaatctggcagtggagttcaatttcattcttgaac |
4921711 |
T |
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