View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17829_low_25 (Length: 228)
Name: NF17829_low_25
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 9323050 - 9323101
Alignment:
| Q |
10 |
attatacttggtaaaaagaatattagccactataacacactgcactattgaa |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9323050 |
attatacttggtaaaaagaatattagccactataacacactgcactattgaa |
9323101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 11457254 - 11457329
Alignment:
| Q |
10 |
attatacttggtaaaaagaatattagccactataacacactgcactattgaaactaaattgcacgaaataatatat |
85 |
Q |
| |
|
||||||||||| |||||| | ||| |||||| |||||||| ||||||| |||| |||| |||||||||||||||| |
|
|
| T |
11457254 |
attatacttggcaaaaagcttcttaaccactacaacacacttcactatttaaaccaaatcgcacgaaataatatat |
11457329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 17206229 - 17206281
Alignment:
| Q |
145 |
gatgttgcaaattctgactctgagtctga-tgcagcggaaaacagaacacaaa |
196 |
Q |
| |
|
||||||| | |||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
17206229 |
gatgttgtagattctgactcagagtctgaatgcagcggaaaacataacacaaa |
17206281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University