View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_28 (Length: 211)
Name: NF17829_low_28
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 28 - 193
Target Start/End: Complemental strand, 11453154 - 11452989
Alignment:
| Q |
28 |
tcatcaccaaagtcatcaccaaagtcatcaacaaaggactcaccagctccatcttcagaaaagaaatcaccagctccatcttcatcttcagaaaagaaat |
127 |
Q |
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| T |
11453154 |
tcatcagcaaaggaatcaccaaagtcatcagcaaaggactcaccagctccatcttcagaaaagaaatcaccagctccatcttcatcttcagtaaagaaat |
11453055 |
T |
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| Q |
128 |
caccaaaggcatcagcaccagttacaggattagatgtcccaacaatctcagatactcctcccctct |
193 |
Q |
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| T |
11453054 |
caccaaaggcatcaggaccagttacaggattagatgtcccaacaatctcagatgctcctcccctct |
11452989 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 11453184 - 11453134
Alignment:
| Q |
22 |
ccagcttcatcaccaaagtcatcaccaaagtcatcaacaaaggactcacca |
72 |
Q |
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| T |
11453184 |
ccagcttcatcaccaaagtcatcaccaaagtcatcagcaaaggaatcacca |
11453134 |
T |
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