View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17829_low_4 (Length: 550)

Name: NF17829_low_4
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17829_low_4
NF17829_low_4
[»] chr5 (15 HSPs)
chr5 (25-540)||(42835060-42835591)
chr5 (106-267)||(16487530-16487691)
chr5 (319-535)||(16487234-16487450)
chr5 (93-269)||(29417622-29417798)
chr5 (93-269)||(24654559-24654735)
chr5 (405-535)||(42777391-42777521)
chr5 (155-248)||(42841429-42841522)
chr5 (142-223)||(42782296-42782377)
chr5 (152-269)||(21698753-21698870)
chr5 (154-211)||(27174351-27174408)
chr5 (154-232)||(40415105-40415183)
chr5 (115-193)||(42797141-42797219)
chr5 (149-194)||(31788657-31788702)
chr5 (142-223)||(41227038-41227119)
chr5 (149-194)||(32031997-32032042)
[»] chr2 (3 HSPs)
chr2 (154-269)||(16920108-16920223)
chr2 (154-192)||(7429892-7429930)
chr2 (154-206)||(29353318-29353370)
[»] chr6 (2 HSPs)
chr6 (125-223)||(21375219-21375317)
chr6 (152-223)||(21379311-21379382)
[»] scaffold0068 (1 HSPs)
scaffold0068 (152-269)||(15040-15157)
[»] scaffold0134 (2 HSPs)
scaffold0134 (152-223)||(17122-17193)
scaffold0134 (319-360)||(16972-17013)
[»] chr8 (1 HSPs)
chr8 (154-206)||(4027058-4027110)
[»] chr4 (1 HSPs)
chr4 (321-365)||(48742657-48742701)


Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 25 - 540
Target Start/End: Complemental strand, 42835591 - 42835060
Alignment:
Q  25 tcctcggtgcaattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaaggtaaaggtaagaaaccaatctcatatacctaatgatcttt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42835591 tcctcggtgcaattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaatgtaaaggtaagaaaccaatctcatatacctaatgatcttt 42835492  T
Q  125 tcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgac 224  Q
    ||||||||||||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42835491 tcttctttattctctccaaaatgtctattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttgtttgataatctttatttcatgac 42835392  T
Q  225 tatgtatcacaactctttcttaacaaagaatcatccttattatgac----------------tacatcaaacttttcatacttatttacaagaaccatac 308  Q
    |||||||| |||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||    
T  42835391 tatgtatcgcaactctttcttaacaaagaatcatccttattatgacgatacatctgtcctcctacatcaaacttttcatacttatttacaagaaccatac 42835292  T
Q  309 cagttgcaaactctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42835291 cagttgcaaactctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccgatatatctgcataaagaagagtatg 42835192  T
Q  409 gttccggttttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataa 508  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835191 attccggttttaatattattggttctggcagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataa 42835092  T
Q  509 ggaatttaagctgcttcctcccagcccctttg 540  Q
    ||||||||||||||||||||||||||| ||||    
T  42835091 ggaatttaagctgcttcctcccagcccttttg 42835060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 106 - 267
Target Start/End: Complemental strand, 16487691 - 16487530
Alignment:
Q  106 catatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttg 205  Q
    |||||| |||||||||||||||||| | ||||||  ||| || | || |||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  16487691 catatatctaatgatcttttcttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggtcgcttttatttg 16487592  T
Q  206 ataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattat 267  Q
    |||| |   |||||||||||||||||| |||   | ||||||||||| ||||| ||||||||    
T  16487591 ataacccacatttcatgactatgtatcgcaataatctcttaacaaaggatcattcttattat 16487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 319 - 535
Target Start/End: Complemental strand, 16487450 - 16487234
Alignment:
Q  319 ctctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatggttccggttt 418  Q
    ||||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||||| ||||||| | || ||   ||||||| ||| |||||    
T  16487450 ctcttgctggtaagaggtttgagaataggatcaaattagattggccaagtgtcaaattagatcctatatatcgggatcaaacggagtatgattctggttt 16487351  T
Q  419 taatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatctaataaggaatttaag 518  Q
    ||||||  | || ||||| || |||| ||||||| | ||| || | |||||||| || |  |||||| |||||||||||||||||| || ||||||||||    
T  16487350 taatatattaggatctggcagcgttcttggaactctgtgtctgttttgtgcatcccatgtgaatattttattgtggaatccatctactatggaatttaag 16487251  T
Q  519 ctgcttcctcccagccc 535  Q
    |   |||||||||||||    
T  16487250 cacattcctcccagccc 16487234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 29417798 - 29417622
Alignment:
Q  93 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||| | |||||||| ||||| || ||||| |||||||||    
T  29417798 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatgg 29417699  T
Q  193 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 269  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  29417698 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 29417622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 24654559 - 24654735
Alignment:
Q  93 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||||| || ||||| ||||| || ||||  |||||||||    
T  24654559 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatgg 24654658  T
Q  193 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 269  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  24654659 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 24654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 405 - 535
Target Start/End: Original strand, 42777391 - 42777521
Alignment:
Q  405 tatggttccggttttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatattgtggaatccatcta 504  Q
    |||| ||| |||||| ||||| | |||||||||||||||||||||| | | ||| || | ||||||| | |||||||||||||||||||||| |||||||    
T  42777391 tatgtttctggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatattgtggaacccatcta 42777490  T
Q  505 ataaggaatttaagctgcttcctcccagccc 535  Q
     ||| ||||| |||||  |||||||||||||    
T  42777491 ctaaagaattcaagctcattcctcccagccc 42777521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 42841522 - 42841429
Alignment:
Q  155 aatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaac 248  Q
    |||||||||||| ||||| ||||||||| ||||||||||| || ||||||||||||| | |||| ||||||||||| | ||||| |||||||||    
T  42841522 aatctttgaagccatttgaatgcgtacataaatcatggtctctattatttgataatcatgattttatgactatgtaccgcaactatttcttaac 42841429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 42782296 - 42782377
Alignment:
Q  142 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||| |||| || ||||||||    
T  42782296 aaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctatttgaaaatccttttttcatga 42782377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 21698753 - 21698870
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 251  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  21698753 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 21698852  T
Q  252 gaatcatccttattatga 269  Q
    | ||||| ||||||||||    
T  21698853 ggatcattcttattatga 21698870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 27174408 - 27174351
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatc 211  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||    
T  27174408 aaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatc 27174351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 40415105 - 40415183
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatc 232  Q
    |||||||||||| | |||||||| |||  ||||||||| || |||||||||||||||   |||||||||||||||||||    
T  40415105 aaatctttgaagaggtttggatgtgtatgcaaatcatgatcgcttttatttgataattcatatttcatgactatgtatc 40415183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 42797219 - 42797141
Alignment:
Q  115 aatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggt 193  Q
    |||||||||||||||| ||||||||  |||||| | ||||||||||||||||||||| |||  ||||  ||||||||||    
T  42797219 aatgatcttttcttctctattctctcaaaattacctattaaatctttgaagcgattttgatatgtacttaaatcatggt 42797141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 31788657 - 31788702
Alignment:
Q  149 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 194  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||    
T  31788657 ccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtc 31788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 41227038 - 41227119
Alignment:
Q  142 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| | ||||||||||| ||||||||| ||||| ||   ||||||||||||||| ||||||| |||| || ||||||||    
T  41227038 aaattaccgattaaatctttaaagcgatttcgatgcatatgtaaatcatggtcccttctatttgaaaatccttttttcatga 41227119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 32031997 - 32032042
Alignment:
Q  149 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 194  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  32031997 ccattaaatctttgaaacgatttgaatgcgtacgcaaattatggtc 32032042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 16920108 - 16920223
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaaga 253  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||| ||||| || ||| |||||||||| ||||||| ||||| |||| |  | || |    
T  16920108 aaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtatcgcaactatttcctttctaata 16920207  T
Q  254 atcatccttattatga 269  Q
    ||||| ||||||||||    
T  16920208 atcattcttattatga 16920223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 7429930 - 7429892
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatgg 192  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  7429930 aaatctttgaagcgatttggatgcgtatgcaaatcatgg 7429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 29353370 - 29353318
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 206  Q
    |||||||||||||| |||||||||||| | ||| ||||||| || ||||||||    
T  29353370 aaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttga 29353318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 125 - 223
Target Start/End: Complemental strand, 21375317 - 21375219
Alignment:
Q  125 tcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||| |||||| |  ||||||||  |||||||||||||| |||||||||||||  | |||||||||||||| |||||||| ||  ||||||||||||    
T  21375317 tcttctctattctatcgaaattatctcttaaatctttgaagtgatttggatgcgtctataaatcatggtccctcttatttgaaaacatttatttcatga 21375219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 21379382 - 21379311
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||||||||||||||||||||||||| |  ||||||||||| || |||||||| ||   |||||||||||    
T  21379382 ttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatga 21379311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 15157 - 15040
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 251  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  15157 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 15058  T
Q  252 gaatcatccttattatga 269  Q
    | ||||| ||||||||||    
T  15057 ggatcattcttattatga 15040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 17193 - 17122
Alignment:
Q  152 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 223  Q
    |||||||||||||| |||||| ||||||   |||||||||||| || ||| ||||||||  |||||||||||    
T  17193 ttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgataattcttatttcatga 17122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 17013 - 16972
Alignment:
Q  319 ctctttctggtgagaggtttgagaaaagggtcaacttagatt 360  Q
    ||||||||||||||||||||||||| | |||||| |||||||    
T  17013 ctctttctggtgagaggtttgagaataaggtcaaattagatt 16972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 4027058 - 4027110
Alignment:
Q  154 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 206  Q
    ||||||||||| || |||||||| ||||||||| ||||||| || ||||||||    
T  4027058 aaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttga 4027110  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 48742701 - 48742657
Alignment:
Q  321 ctttctggtgagaggtttgagaaaagggtcaacttagattggcca 365  Q
    ||||||||||||| ||||||||| | |||||| ||||||||||||    
T  48742701 ctttctggtgagacgtttgagaataaggtcaaattagattggcca 48742657  T

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