View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17829_low_5 (Length: 523)
Name: NF17829_low_5
Description: NF17829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17829_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 514
Target Start/End: Complemental strand, 34348156 - 34347655
Alignment:
| Q |
14 |
cagaattctggtaaattnnnnnnntgtgagggcacaaagcaagatctaaaaagtcgaggactatgtttggtaccagtttctagcacatttccagtgactc |
113 |
Q |
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| T |
34348156 |
cagaattctggtaaattaaaaaaatgtgagggcacaaagcaagatctaaaaagtcgaggactatgtttggtaccagtttctagcacatttccagtgactc |
34348057 |
T |
|
| Q |
114 |
atgaaacaacagttgatttttggacaccaacatttggagggacatcaagataatattaatggatgnnnnnnntatagtgacatggaaccaatatccttca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34348056 |
atgaaacaacagttgatttttggacaccaacatttggagggacatcaagataatattaatggatgaaaaaaatatagtgacatggaaccaatatccttca |
34347957 |
T |
|
| Q |
214 |
actagggcatgcatgtatgtaccttatcaaacctagccaagttgggaatgataagnnnnnnnnntgaaagagaaacatgaaagtagacaaagaaacccac |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34347956 |
actagggcatgcatgtatgtaccttatcaaacctagccaagttgggaatgataagaaaaaaaaatgaaagagaaacatgaaagtagacaaagaaacccac |
34347857 |
T |
|
| Q |
314 |
ttaaatatgtaaagttagttagttctaatgagggaaatgg-nnnnnnngagagtggggagaagggaaatttttgttgaaagagaaagaaaaggaagtgac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34347856 |
ttaaatatgtaaagttagttagttctaatgagggaaatggaaaaaaaagagagtggggagaagggaaatttttgttgaaagagaaagaaaaggaagtgac |
34347757 |
T |
|
| Q |
413 |
aattcaaaaagatagccattgatgggccaactacattcagaattattcagggttttgggaaatatttgggaccatttggagttgtaataattgaagtatt |
512 |
Q |
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| T |
34347756 |
aattcaaaaagatagccattgatgggccaactacattcagaattattcagggttttgggaaatatttgggaccatttggagttgtaataattgaagtatt |
34347657 |
T |
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| Q |
513 |
at |
514 |
Q |
| |
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|| |
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| T |
34347656 |
at |
34347655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 23872692 - 23872587
Alignment:
| Q |
48 |
caaagcaagatctaaaaagtcgaggactatgtttggtaccagtttctagcacatttccagtgactcatgaaacaacagttgatttttggacaccaacatt |
147 |
Q |
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||||||| ||||| | ||| |||| |||||||| |||||||||||||| ||||||||| ||||||||||| | |||||||| | ||||||||||||||| |
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| T |
23872692 |
caaagcaggatcttagaagcagagggctatgtttagtaccagtttctagtacatttccaatgactcatgaacccacagttgaatattggacaccaacatt |
23872593 |
T |
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| Q |
148 |
tggagg |
153 |
Q |
| |
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|||||| |
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|
| T |
23872592 |
tggagg |
23872587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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