View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_high_1 (Length: 585)
Name: NF1782_high_1
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 176 - 574
Target Start/End: Complemental strand, 33964996 - 33964598
Alignment:
| Q |
176 |
ccaatcatacaaagaaaattatttcaaactcaaatttaaccattctcctatctaatactcgtttttatatgatcatatttttctctcaaaaacttaaacc |
275 |
Q |
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| T |
33964996 |
ccaatcatacaaagaaaattatttcaaactcaaatttaaccattttcctatctaatactcgtttttatatgatcatatttttctctgaaaaacataaacc |
33964897 |
T |
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| Q |
276 |
acacttaactcctaccattctttcattctatagcttaaaattagcagcccttctctctaaaatatttcaatcatttctctctaatggtttttgatgtaag |
375 |
Q |
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| T |
33964896 |
acacttaactcctaccattctttcattctatagcttaaaattagcagcccttctctctaaaatatttcaatcatttctctctaatggtttttgatgtaag |
33964797 |
T |
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| Q |
376 |
aacacacattttcaacaaactcaaaactgagggagcagttgacacattatcaaaaccatcttaatctataaggatacagtagaggaggtcatttcaaatg |
475 |
Q |
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| T |
33964796 |
aacacacattttcaacaaactcaaaactgagggagcagttgacacattatcaaaaccatcctaatctataaggatacagtagaggaggtcatttcaaatt |
33964697 |
T |
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| Q |
476 |
aagggcattttcctgatcaatacaattgttatgatgaacacggtttgttttttggaccggtcttccatgctacggatagaacggcctctcttgtgatga |
574 |
Q |
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| T |
33964696 |
aagggcattttcctaatcaatacaattgttatgatgaacacggtttgtgttttggaccggtcttccatgctacggatagaacggcttctcttgtgatga |
33964598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 33968047 - 33967909
Alignment:
| Q |
22 |
aaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgttaaattaattaagttctgccgtgt |
121 |
Q |
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| T |
33968047 |
aaggattctgtgaagcattttaaaagaaaacatatgcgctatcacttgcaaactatcaacagataaagagatttgctaaattaattaagttctgccgtgt |
33967948 |
T |
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| Q |
122 |
ttaggattgaaaaaatgcaatatctaaataacattaccg |
160 |
Q |
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| T |
33967947 |
ttaggattgaaaaaatgcaatatctaaataacattaccg |
33967909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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