View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_high_12 (Length: 252)
Name: NF1782_high_12
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 45589460 - 45589702
Alignment:
| Q |
13 |
aaggggtgtctataaaacgacattttaattccaaagcgaatccaatacaaga--------gtaaaaagctgagagatactataattagggcaagacctgc |
104 |
Q |
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| T |
45589460 |
aaggggtatctataaaacgacattttaattccaaagtgagtccaatacaagagtaaaagagtaaaaagctgagagatactataattagggcaagacctgc |
45589559 |
T |
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| Q |
105 |
cttatatgggaagtggcacatgtcttaatggacttagtgtcttaggactatagaacagtgagaaacatattcatattcattaaatcggttaagcgtcgtg |
204 |
Q |
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| T |
45589560 |
cttatatgggaagtggcacatgtcttaatggacttagtgtcttaggaccgtagaacagtgagaaacatattcatattcattaaatcggttcagcgtcgtg |
45589659 |
T |
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| Q |
205 |
aaaagttggttcttagctcgatcgttgtactctcatgtttata |
247 |
Q |
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| T |
45589660 |
aaaagttggttcttagctcgatcgttgtactctcatgtttata |
45589702 |
T |
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