View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_high_14 (Length: 244)
Name: NF1782_high_14
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 35429695 - 35429904
Alignment:
| Q |
18 |
ctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagt |
117 |
Q |
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| T |
35429695 |
ctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagt |
35429794 |
T |
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| Q |
118 |
cccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35429795 |
cccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctt |
35429894 |
T |
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| Q |
218 |
cgtctgtatt |
227 |
Q |
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||||||||| |
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| T |
35429895 |
tgtctgtatt |
35429904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 35420556 - 35420765
Alignment:
| Q |
18 |
ctatggatgcatcaatcgttcgactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420556 |
ctatggatgcatcaatcgttcaactccgtattcttgtccaatgtgtcgacaagagataatgtgagtagagaagggacaatatgcatgcattaattgaagt |
35420655 |
T |
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| Q |
118 |
cccttgttcattgtttcaggtttattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35420656 |
cccttgttcattgtttcaggtgtattgggtctctaatggtgtttgtttttgtgggtttattgttgtaaggtgtggcaggtctgtgtcgtgctttctgctt |
35420755 |
T |
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| Q |
218 |
cgtctgtatt |
227 |
Q |
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||||||||| |
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| T |
35420756 |
tgtctgtatt |
35420765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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