View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_high_2 (Length: 540)
Name: NF1782_high_2
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 304 - 522
Target Start/End: Complemental strand, 43714542 - 43714324
Alignment:
| Q |
304 |
ctactaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcat |
403 |
Q |
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| T |
43714542 |
ctactaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcat |
43714443 |
T |
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| Q |
404 |
aattagtttcaaagtagttaaacttctgcggttcattataaataagaaacaaagtatgattcctgcccagaacttttgcttaaagtgatgttattgttca |
503 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714442 |
aattagtttcaaagtagttaaacttctgcggtttattataaataagaaacaaagtatgattcctgcccagaacttttgcttaaagtgatgttattgttca |
43714343 |
T |
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| Q |
504 |
tccagtagaagtattcatt |
522 |
Q |
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||||||||||||||||||| |
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| T |
43714342 |
tccagtagaagtattcatt |
43714324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 43714845 - 43714648
Alignment:
| Q |
1 |
tgaaagaacatttgcatgtgtatattaactaaatataggatatggagtttaccaagttgcatgcaataaaggttgcaatttgtatgcaggaaatctagta |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714845 |
tgaaagaacatttgcatgtgtatattaaccaaatataggatatggagtttaccaatttgcatgcaataaaggttgcaatttgtatgcaggaaatctagta |
43714746 |
T |
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| Q |
101 |
gtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaatattttaatctgtgtagg |
198 |
Q |
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| T |
43714745 |
gtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaatattttaatctgtgtagg |
43714648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 304 - 519
Target Start/End: Original strand, 52893183 - 52893398
Alignment:
| Q |
304 |
ctactaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcat |
403 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | || |||| ||||||||||| ||||||||| ||||||||||||||||| | |
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| T |
52893183 |
ctactaggaaaaagtaccaaatttgacatagtataaagtctagacaatttgtgccttataagtcaattttgtgaggctgaattaggccctgaaacttcgt |
52893282 |
T |
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| Q |
404 |
aattagtttcaaagtagttaaacttctgcggttcattataaataagaaacaaagtatgatt-cctgcccagaacttttgcttaaagtgatgttattgttc |
502 |
Q |
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||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52893283 |
aattagtttcaaagtag-caagtttctgcaattcagtataaataagaaacaaagtatgattccctgcccagaacttttgcttaaagtgatgttattgttc |
52893381 |
T |
|
| Q |
503 |
atccagtagaagtattc |
519 |
Q |
| |
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| T |
52893382 |
acccagtagaagtattc |
52893398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 52892884 - 52893076
Alignment:
| Q |
3 |
aaagaacatttgcatgtgtatattaactaaatataggatatggagtttaccaagttgcatgcaataaa-----ggttgcaatttgtatgcaggaaatcta |
97 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||| ||||||||| |||| ||||||||||| |
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| T |
52892884 |
aaagaacatttgcatccatatattaactaaatataggatatttagtttaccaatttgcatgcaaaaaaaaaaaggttgcaatctgtacacaggaaatcta |
52892983 |
T |
|
| Q |
98 |
gtagtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaatattttaatctgtgtag |
197 |
Q |
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||| | |||||||||| |||| |||||||||||| | ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |
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| T |
52892984 |
gtaat---tcacaatttggcaagttcgttattgctagaagt-----gtttgatatcattcacgtgtttagaatatttgtaaaatattttaatctgtatag |
52893075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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