View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_high_5 (Length: 375)
Name: NF1782_high_5
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 12799829 - 12800193
Alignment:
| Q |
1 |
ttatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaaacaaaactatgtccaacaatttgttaact |
100 |
Q |
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| T |
12799829 |
ttatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaactaaaagaaaacaaaactatgtccaacaatttgttaact |
12799928 |
T |
|
| Q |
101 |
cactcaaccactaaaactaaccttaaatagaagccaaagaaatcaccttctcattctcatt------tcccatttctcacacttctcatttctcaaattc |
194 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
12799929 |
cactcaaccactaaaactaaccttaaatagaagccaaagaaatcaccttctcattctcattctcatttcccatttctcac--ttctcatttctcaaattc |
12800026 |
T |
|
| Q |
195 |
cacaccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatcatttgcaattcacattatcctccttgcttccatacctt |
294 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12800027 |
cactccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatcatttgcaattcacattatcctccttgcttccatacctt |
12800126 |
T |
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| Q |
295 |
tcacatcatctcaatccaacgatttaatagatcaaatatgcnnnnnnncacccttctacgacctatg |
361 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12800127 |
tcacatcatcccaatccaacgatttaatagatcaaatatgcaaaaaaacacccttctacgacctatg |
12800193 |
T |
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