View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1782_low_10 (Length: 314)

Name: NF1782_low_10
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1782_low_10
NF1782_low_10
[»] chr2 (26 HSPs)
chr2 (72-303)||(30732005-30732237)
chr2 (72-291)||(30733985-30734205)
chr2 (72-275)||(32918077-32918281)
chr2 (72-275)||(43850046-43850250)
chr2 (27-189)||(2841010-2841173)
chr2 (75-292)||(9020847-9021065)
chr2 (72-291)||(9026783-9027003)
chr2 (70-291)||(9008016-9008238)
chr2 (72-292)||(8973309-8973530)
chr2 (77-222)||(19232359-19232504)
chr2 (72-148)||(9032050-9032126)
chr2 (82-182)||(10763878-10763978)
chr2 (43-156)||(9023415-9023528)
chr2 (72-189)||(9030395-9030512)
chr2 (72-142)||(8979319-8979389)
chr2 (72-188)||(8992145-8992262)
chr2 (72-189)||(9016490-9016611)
chr2 (72-142)||(8984690-8984760)
chr2 (72-187)||(8988452-8988568)
chr2 (77-182)||(6471709-6471813)
chr2 (103-186)||(17225659-17225743)
chr2 (79-189)||(35701893-35702003)
chr2 (106-189)||(17275862-17275945)
chr2 (130-212)||(8912989-8913074)
chr2 (235-291)||(8992294-8992349)
chr2 (78-113)||(39814115-39814150)
[»] chr1 (21 HSPs)
chr1 (72-303)||(14669587-14669819)
chr1 (72-303)||(14706085-14706317)
chr1 (72-282)||(14708575-14708786)
chr1 (72-300)||(14654222-14654450)
chr1 (72-300)||(14664013-14664241)
chr1 (72-303)||(14683747-14683979)
chr1 (72-283)||(14716288-14716500)
chr1 (75-300)||(14652525-14652752)
chr1 (75-300)||(14662316-14662543)
chr1 (72-269)||(14674478-14674676)
chr1 (72-269)||(14681596-14681794)
chr1 (72-300)||(14679856-14680085)
chr1 (72-291)||(38175420-38175640)
chr1 (43-283)||(28366097-28366338)
chr1 (72-291)||(14667007-14667221)
chr1 (72-212)||(33988067-33988208)
chr1 (72-170)||(14676629-14676727)
chr1 (78-192)||(11872471-11872585)
chr1 (81-153)||(37422175-37422247)
chr1 (72-147)||(28698550-28698625)
chr1 (129-188)||(14703134-14703193)
[»] chr8 (15 HSPs)
chr8 (72-283)||(10944297-10944509)
chr8 (19-189)||(44878927-44879097)
chr8 (19-189)||(44880824-44880994)
chr8 (75-293)||(40054312-40054531)
chr8 (27-276)||(41841058-41841307)
chr8 (77-273)||(37679757-37679953)
chr8 (75-275)||(37682057-37682258)
chr8 (92-187)||(44582870-44582965)
chr8 (72-175)||(42555090-42555193)
chr8 (42-148)||(42220880-42220985)
chr8 (69-148)||(42092015-42092093)
chr8 (72-118)||(42872514-42872560)
chr8 (129-181)||(44583111-44583162)
chr8 (135-189)||(42554655-42554709)
chr8 (226-291)||(42872408-42872471)
[»] chr4 (17 HSPs)
chr4 (72-276)||(11652298-11652502)
chr4 (72-282)||(49106428-49106639)
chr4 (75-282)||(3461042-3461249)
chr4 (72-222)||(50077158-50077309)
chr4 (72-290)||(49108524-49108743)
chr4 (76-187)||(26998735-26998846)
chr4 (76-181)||(26984668-26984773)
chr4 (76-187)||(48205832-48205943)
chr4 (103-189)||(21503706-21503792)
chr4 (77-180)||(41013548-41013651)
chr4 (82-182)||(26982549-26982646)
chr4 (111-184)||(35806165-35806238)
chr4 (76-175)||(49533638-49533730)
chr4 (139-182)||(54677590-54677633)
chr4 (132-182)||(34481105-34481155)
chr4 (82-135)||(6431957-6432010)
chr4 (80-116)||(34481155-34481191)
[»] chr5 (8 HSPs)
chr5 (75-291)||(7524968-7525185)
chr5 (20-278)||(3643585-3643843)
chr5 (72-189)||(1716444-1716562)
chr5 (79-187)||(4103249-4103357)
chr5 (108-212)||(5350672-5350777)
chr5 (77-184)||(16037861-16037966)
chr5 (82-146)||(19261152-19261216)
chr5 (129-189)||(13636366-13636426)
[»] chr6 (8 HSPs)
chr6 (72-231)||(10795840-10796000)
chr6 (72-290)||(10791543-10791762)
chr6 (75-272)||(30521242-30521440)
chr6 (129-272)||(13136608-13136752)
chr6 (77-187)||(8875691-8875803)
chr6 (118-189)||(11333273-11333344)
chr6 (201-274)||(10509478-10509551)
chr6 (82-181)||(21216032-21216131)
[»] chr7 (2 HSPs)
chr7 (75-189)||(27134511-27134625)
chr7 (81-189)||(8128149-8128256)
[»] chr3 (1 HSPs)
chr3 (77-123)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (129-186)||(5450-5507)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 30732005 - 30732237
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30732005 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaa 30732104  T
Q  172 attacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30732105 attacttttttgagggggggaggccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcacccca 30732204  T
Q  271 ccaattcaagtttaaatttttattctggttcat 303  Q
    |||||||||||||||||||||||||||||||||    
T  30732205 ccaattcaagtttaaatttttattctggttcat 30732237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 30733985 - 30734205
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    ||||||||||| |||||| || |||| || |||||||||||||||||||||| | |||||| || || |||||||||| |||||||  ||||||||||||    
T  30734085 attactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcacccca 30734184  T
Q  271 ccaattcaagtttaaattttt 291  Q
    ||||| |||||| ||||||||    
T  30734185 ccaatccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 32918077 - 32918281
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 32918176  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| || |||| |  ||||||||||||||  ||||||  |||||||  |||| |||||||||||||||| || ||||||||| ||    
T  32918177 attacttttttgagggggagaagccattgcagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacctca 32918276  T
Q  271 ccaat 275  Q
    |||||    
T  32918277 ccaat 32918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 72 - 275
Target Start/End: Original strand, 43850046 - 43850250
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||| ||||||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaa 43850145  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    || ||||||||||||||| |||| ||||| | |||||||||| | | |||||  ||||||| | ||| |||||||||| |||| ||  |||||||||| |    
T  43850146 atcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcataggcttggcgcacccaa 43850245  T
Q  271 ccaat 275  Q
    |||||    
T  43850246 ccaat 43850250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 2841173 - 2841010
Alignment:
Q  27 agtgagtggacgagggatataaaagcagaggcgagcccgagattaaa-ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 125  Q
    |||||||||| | | |||||||||||||| ||||||||    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841173 agtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 2841074  T
Q  126 tcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    || ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  2841073 tcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttgaggggg 2841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 292
Target Start/End: Original strand, 9020847 - 9021065
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaat 173  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||  ||||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaat 9020946  T
Q  174 tacttttttgaggg-gggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 272  Q
    |||||||||||||| | ||||||| || | || ||||||| | |||||||   |||||  | |||||||||||||| |||| ||| ||| ||||||||||    
T  9020947 tacttttttgagggtgagaggccatttcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt-tggtgcaccccacc 9021045  T
Q  273 aattcaagtttaaattttta 292  Q
    |||||||||| |||||||||    
T  9021046 aattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 9026783 - 9027003
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatatta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||| ||  |||||    
T  9026783 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtatta 9026882  T
Q  171 aattacttttttgag-gggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 269  Q
    ||||||||||||||| ||| ||| ||| || | |||||||||| | || ||||   |||||| | |||  ||||||||| ||||||| ||||| ||||||    
T  9026883 aattacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgctttgcactattgcattgg-ctggcacacccc 9026981  T
Q  270 accaattcaagtttaaattttt 291  Q
     |||||||||||| ||||||||    
T  9026982 tccaattcaagttcaaattttt 9027003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 70 - 291
Target Start/End: Original strand, 9008016 - 9008238
Alignment:
Q  70 taaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttca-cacgatat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||  ||  |||    
T  9008016 taaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtat 9008115  T
Q  169 taaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacc 267  Q
    ||||||||||||||||||||| ||||||| || | || |||| || | || ||||   |||||| | |||  ||||||||| ||||| | ||||| ||||    
T  9008116 taaattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcg-ctggcacacc 9008214  T
Q  268 ccaccaattcaagtttaaattttt 291  Q
    |||||||||| |||| || |||||    
T  9008215 ccaccaattctagttcaatttttt 9008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 292
Target Start/End: Original strand, 8973309 - 8973530
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatatta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||| ||||||| |||| || ||||||    
T  8973309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatatta 8973408  T
Q  171 aattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 269  Q
    |||||||||||| |||||| ||| ||| || | |||||||||  | || ||||   |||| |   ||| |||||||||| ||| ||  ||||||| ||||    
T  8973409 aattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgcgttgcactattgca-tgagctggcgcgcccc 8973507  T
Q  270 accaattcaagtttaaattttta 292  Q
    ||||||||||||| |||||||||    
T  8973508 accaattcaagttcaaattttta 8973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 77 - 222
Target Start/End: Complemental strand, 19232504 - 19232359
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 176  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  177 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 222  Q
     |||||||||||| || ||||||| | |||||||||| | |||||||    
T  19232405 ctttttgagggggagaagccacttcaatagcttgctattgggcttct 19232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 9032050 - 9032126
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 148  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9032050 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 181  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  182 t 182  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 9023415 - 9023528
Alignment:
Q  43 atataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 142  Q
    ||||||||||| | ||||| || |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  143 atgtggaccaatgg 156  Q
      |||| |||||||    
T  9023515 tagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 9030395 - 9030512
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| ||| | ||||  |||||| ||||||  ||||||    
T  9030395 aactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaa 9030494  T
Q  172 attacttttttgaggggg 189  Q
    ||||||||||||||||||    
T  9030495 attacttttttgaggggg 9030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 8979319 - 8979389
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8979319 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 8992145 - 8992262
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatatta 170  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| |||||||||  ||| ||||||||||  |||| ||||||| |||| |  ||||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatatta 8992244  T
Q  171 aattacttttttgagggg 188  Q
    ||||||||||||||||||    
T  8992245 aattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 9016490 - 9016611
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---ggtttaatatctgatatgtggaccaatggttcac-acgata 167  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||    ||||||||||||||  |||| ||||||| |||| ||  ||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagta 9016589  T
Q  168 ttaaattacttttttgaggggg 189  Q
    ||||||||||||||||||||||    
T  9016590 ttaaattacttttttgaggggg 9016611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 8984690 - 8984760
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||    
T  8984690 aactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 187
Target Start/End: Original strand, 8988452 - 8988568
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatatta 170  Q
    |||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||  |||   ||||||||| | || ||||||    
T  8988452 aacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatatta 8988551  T
Q  171 aattacttttttgaggg 187  Q
    |||||||||||||||||    
T  8988552 aattacttttttgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 176  Q
    |||||||| ||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||  || | ||||| ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  177 tttttt 182  Q
    ||||||    
T  6471714 tttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  103 atcaagtgtagtatctgttctt-atcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 186  Q
    ||||||||||||||||||| || |||||||||||| ||||||| ||| ||||||  ||| |||||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 189
Target Start/End: Original strand, 35701893 - 35702003
Alignment:
Q  79 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 178  Q
    |||||||||  | |||||||||||||||||||| |||| |||| ||||  ||||||||| |||||||||| ||||    |||||||||||||  ||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttactt 35701992  T
Q  179 ttttgaggggg 189  Q
    |||||||||||    
T  35701993 ttttgaggggg 35702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 17275862 - 17275945
Alignment:
Q  106 aagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    |||||||||||  ||||||||| ||| ||| | | |||||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgaggggg 17275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Original strand, 8912989 - 8913074
Alignment:
Q  130 tttaatatctgatatgtggaccaatggttcacac--gatattaaattacttttttgaggggg-gaggccacttaagtagcttgcta 212  Q
    |||||||| | |||||||| ||||||  ||||||  |||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  8912989 tttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggagagaccatttcagtagcttgcta 8913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  235 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 291  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  78 tacctttctcggccttttggctaagatcaagtgtag 113  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 72 - 303
Target Start/End: Complemental strand, 14669819 - 14669587
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14669819 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14669720  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  14669719 attacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggtgcacccca 14669620  T
Q  271 ccaattcaagtttaaatttttattctggttcat 303  Q
    |||||||||||||||||||||||||||||||||    
T  14669619 ccaattcaagtttaaatttttattctggttcat 14669587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 14706085 - 14706317
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14706085 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14706184  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||| | | ||||||||||||||| ||||||||||||||||||||    
T  14706185 attacttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggcgcacccca 14706284  T
Q  271 ccaattcaagtttaaatttttattctggttcat 303  Q
    |||||||||||||||||||||||||||||||||    
T  14706285 ccaattcaagtttaaatttttattctggttcat 14706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 14708575 - 14708786
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14708575 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14708674  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| |||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||    
T  14708675 attacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggcgcacccca 14708774  T
Q  271 ccaattcaagtt 282  Q
    ||||||||||||    
T  14708775 ccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 14654450 - 14654222
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14654450 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14654351  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  |||| |||||||    
T  14654350 attacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcacccca 14654251  T
Q  271 ccaattcaagtttaaatttttattctggtt 300  Q
    |||||||||| |||||||||||||||||||    
T  14654250 ccaattcaag-ttaaatttttattctggtt 14654222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 72 - 300
Target Start/End: Complemental strand, 14664241 - 14664013
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14664241 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14664142  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  |||| |||||||    
T  14664141 attacttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcacccca 14664042  T
Q  271 ccaattcaagtttaaatttttattctggtt 300  Q
    |||||||||| |||||||||||||||||||    
T  14664041 ccaattcaag-ttaaatttttattctggtt 14664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 14683747 - 14683979
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14683747 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14683846  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||| | ||| |||||||  ||||||||||||||||||||||||  ||| ||||||||    
T  14683847 attacttttttgagggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcacccca 14683946  T
Q  271 ccaattcaagtttaaatttttattctggttcat 303  Q
    ||||| |||  ||||||||||||||||||||||    
T  14683947 ccaatccaaagttaaatttttattctggttcat 14683979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 72 - 283
Target Start/End: Original strand, 14716288 - 14716500
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  14716288 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaa 14716387  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||  ||| ||||||||    
T  14716388 attacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttggtgcacccca 14716487  T
Q  271 ccaattcaagttt 283  Q
    |||||||||||||    
T  14716488 ccaattcaagttt 14716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 14652525 - 14652752
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14652625 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14652724  T
Q  274 attcaagtttaaat-ttttattctggtt 300  Q
    ||||||||| |||| ||||||| |||||    
T  14652725 attcaagttcaaatattttattttggtt 14652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 75 - 300
Target Start/End: Original strand, 14662316 - 14662543
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  |||||||||||||||    
T  14662416 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacca 14662515  T
Q  274 attcaagtttaaat-ttttattctggtt 300  Q
    ||||||||| |||| ||||||| |||||    
T  14662516 attcaagttcaaatattttattttggtt 14662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 14674478 - 14674676
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  14674478 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14674577  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 269  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14674578 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 72 - 269
Target Start/End: Original strand, 14681596 - 14681794
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14681596 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14681695  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 269  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14681696 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 72 - 300
Target Start/End: Original strand, 14679856 - 14680085
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  14679856 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14679955  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| || ||||  | |||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||||  |||||||||| |    
T  14679956 attacttttttgagggggagaagccatattagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcgcacccga 14680055  T
Q  271 ccaattcaagtttaaatttttattctggtt 300  Q
    |||||   ||| ||||||||| || |||||    
T  14680056 ccaatctgagtctaaattttttttttggtt 14680085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 38175640 - 38175420
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaa 38175541  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| ||  |||| | ||||||||||| || || || |  |||||||   ||||||||||||||  |||  | |||||||||||||    
T  38175540 attacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcacccca 38175441  T
Q  271 ccaattcaagtttaaattttt 291  Q
    ||||||| |||| || |||||    
T  38175440 ccaattctagttcaatttttt 38175420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 43 - 283
Target Start/End: Complemental strand, 28366338 - 28366097
Alignment:
Q  43 atataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 142  Q
    ||||||||||||| |||| |||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 28366239  T
Q  143 atgtg-gaccaatggttcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgt 240  Q
    |||||   ||||||| ||||||||||||||||||||||||| |||||| ||| | | |  |||||||||||||||||  | |  ||||||||  ||| ||    
T  28366238 atgtgaccccaatgggtcacacgatattaaattacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgt 28366139  T
Q  241 tgcactatagcattggtctggcgcaccccaccaattcaagttt 283  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||    
T  28366138 tgcactattgcattgg-ctggcgcatcccaccaattaaagttt 28366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 14667221 - 14667007
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  172 attacttttttgaggggg-gaggcca-cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 269  Q
    ||||||||||  |||||| || ||||  || |||||       | |||||||| | |||| | || |||||||||||||||||||||  |||||||||||    
T  14667121 attactttttctagggggagaagccatttttagtag-------caaggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcacccc 14667029  T
Q  270 accaattcaagtttaaattttt 291  Q
    |||||| |||| | ||||||||    
T  14667028 accaatccaagctcaaattttt 14667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 33988067 - 33988208
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||  ||||||||||||||    
T  33988067 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaa 33988166  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgcta 212  Q
    ||||||||||| |||||| ||||||| || | ||||||||||    
T  33988167 attacttttttaagggggagaggccatttcaatagcttgcta 33988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 14676629 - 14676727
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14676629 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 78 - 192
Target Start/End: Complemental strand, 11872585 - 11872471
Alignment:
Q  78 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattact 177  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattact 11872486  T
Q  178 tttttgaggggggag 192  Q
    ||||| | |||||||    
T  11872485 ttttttaagggggag 11872471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  81 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaa 153  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 28698550 - 28698625
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg 147  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||  |||||||| |||||||||    
T  28698550 aactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 14703134 - 14703193
Alignment:
Q  129 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg 188  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||  ||||| |||||    
T  14703134 gtttaatatttgatatgtggaccaatagtccacacgatattaaattaaattttttagggg 14703193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 72 - 283
Target Start/End: Complemental strand, 10944509 - 10944297
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  172 attacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    ||||||||||||| |||| || |||| || |||||||||||||||||||||||| |||||   | || ||||||||||||||||||| ||||||||||||    
T  10944409 attacttttttgatggggagaagccattttagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcacccca 10944310  T
Q  271 ccaattcaagttt 283  Q
    |||||||||||||    
T  10944309 ccaattcaagttt 10944297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 44878927 - 44879097
Alignment:
Q  19 agagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44878927 agagagatagagagtggacgagggatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 44879026  T
Q  119 gttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||    
T  44879027 gttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgaggggg 44879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 44880994 - 44880824
Alignment:
Q  19 agagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44880994 agagagatagagagtggacgagggatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 44880895  T
Q  119 gttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    ||||||||| ||||||||||||||||||||  |||||| ||||| ||||||||||||||||||||||||||    
T  44880894 gttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgaggggg 44880824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 75 - 293
Target Start/End: Original strand, 40054312 - 40054531
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    ||||||||||||||| |||||||||| | |||||||||| | ||||||||  ||||||   |||||||||||||| ||||  |  |||||||||||||||    
T  40054412 acttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccacca 40054511  T
Q  274 attcaagtttaaatttttat 293  Q
    || | |||| || |||||||    
T  40054512 atactagttcaattttttat 40054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 27 - 276
Target Start/End: Complemental strand, 41841307 - 41841058
Alignment:
Q  27 agtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 126  Q
    |||||||||| | | |||||||||||||| || | |||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841307 agtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 41841208  T
Q  127 cggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgt 225  Q
    | |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| || |||||   | |||||||||| | ||||||| |     
T  41841207 cagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttttgatggggagaagccaccccaatagcttgctattgggcttctcga 41841108  T
Q  226 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaatt 276  Q
    |||||| | |||||||||||||| ||| ||| ||||||||||||| |||||    
T  41841107 gtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccatcaatt 41841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 37679757 - 37679953
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||  |||||||||||      
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattta 37679856  T
Q  177 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    ||| ||||||||| ||||||||    ||||||||||| | ||| || | ||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  37679857 tttattgagggggagaggccaccacggtagcttgctattgggcctc-tctgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 275
Target Start/End: Original strand, 37682057 - 37682258
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T
Q  175 acttttttgagg-ggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
      |||||| |||  | ||| ||||  || |||||||||| ||||  |||   ||||| ||  |  |||||||||| ||||||||||||||| ||||||||    
T  37682157 tgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaagtgtcatctttacgttgcactattgcattggtctggcgcgccccacca 37682256  T
Q  274 at 275  Q
    ||    
T  37682257 at 37682258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 44582870 - 44582965
Alignment:
Q  92 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggg 187  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||| |   | ||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgaggg 44582965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 42555193 - 42555090
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    ||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||| ||||||||| ||||||||||  |||||  ||||||||||||||    
T  42555193 aactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaa 42555094  T
Q  172 atta 175  Q
    ||||    
T  42555093 atta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 42220985 - 42220880
Alignment:
Q  42 gatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctga 141  Q
    |||||||||||||||||||||      || ||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctga 42220887  T
Q  142 tatgtgg 148  Q
    |||||||    
T  42220886 tatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 42092015 - 42092093
Alignment:
Q  69 ttaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 148  Q
    ||||||||||||||||||  |||||||| |||| || ||||||| ||| |||||||||| ||||||||||||||||||||    
T  42092015 ttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 44583111 - 44583162
Alignment:
Q  129 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 181  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  44583111 gtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Complemental strand, 42554709 - 42554655
Alignment:
Q  135 tatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    ||||||||||||||  |||||  | |||||||||||||||| |||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgaggggg 42554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 42872471 - 42872408
Alignment:
Q  226 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 291  Q
    |||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||    
T  42872471 gtgtcgtctatgtgttgcactattgca-tgggctgacgcaccccaccaatt-aagtttaatttttt 42872408  T

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Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 11652502 - 11652298
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  11652502 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaa 11652403  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||| ||||||||||||| || ||||||  | |||||||||| | ||||||||| |||||| | |||||||||||||| ||| ||| |||||||||||||    
T  11652402 attatttttttgagggggagaagccactccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcacccca 11652304  T
Q  271 ccaatt 276  Q
    ||||||    
T  11652303 ccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 49106639 - 49106428
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  49106639 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 49106540  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| || | ||| | |||||||||||||| |  ||||| |||||||   |||||||||||||| ||||  |   |||||||||||    
T  49106539 attacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcacccca 49106440  T
Q  271 ccaattcaagtt 282  Q
    ||||||| ||||    
T  49106439 ccaattctagtt 49106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 75 - 282
Target Start/End: Complemental strand, 3461249 - 3461042
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||||||||||    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 3461150  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    |||||||| |||||| || |||| || | |||||||||| | || |||| | |||||||| ||| |||||||||| |||| || ||||| ||||||||||    
T  3461149 acttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcatagg-ctggcacaccccacca 3461051  T
Q  274 attcaagtt 282  Q
    || ||||||    
T  3461050 atacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 50077309 - 50077158
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| ||||||||    
T  50077309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaa 50077210  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 222  Q
    |||||||||||||||||| || ||||||| | |||||||||| | |||||||    
T  50077209 attacttttttgagggggagaagccacttcaatagcttgctattgggcttct 50077158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 72 - 290
Target Start/End: Complemental strand, 49108743 - 49108524
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| ||||||||||||||    
T  49108743 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaa 49108644  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| || | ||    |||||||||||| | | |||||| |||||||   |||||||||||||| ||||  |   |||||||||||    
T  49108643 attacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcacccca 49108544  T
Q  271 ccaattcaagtttaaatttt 290  Q
    ||||| | ||||||| ||||    
T  49108543 ccaatcctagtttaattttt 49108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 76 - 187
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  176 cttttttgaggg 187  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  176 cttttt 181  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 175  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||   |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  176 cttttttgaggg 187  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 21503706 - 21503792
Alignment:
Q  103 atcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||| | |||||||||||||||||| |||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggggg 21503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 176  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  177 tttt 180  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 181  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||   ||||| ||||| ||||||||| ||||| || ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgttatta---gtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  111 tagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 184  Q
    |||||| |||||||||| ||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 49533730 - 49533638
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 175  Q
    |||||||||||||||| || ||||||||||||||| | |||||||||||||     |||||||||||||||    |||| | ||||||||||||||||||    
T  49533730 catacctttctcggccctt-ggctaagatcaagtgca-tatctgttcttat-----taatatctgatatgttactcaataggtcacacgatattaaatta 49533638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  139 tgatatgtggaccaatggttcacacgatattaaattactttttt 182  Q
    |||||||||| | ||||| |||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 34481155 - 34481105
Alignment:
Q  132 taatatctgatatgtggaccaatggttcacacgatattaaattactttttt 182  Q
    |||||||||||||||| | ||||| | |||| |||||||||||||||||||    
T  34481155 taatatctgatatgtgaatcaatgatccacaagatattaaattactttttt 34481105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaat 135  Q
    ||||||||||| ||||||||||||| || |||||||| |||||||  |||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  80 cctttctcggccttttggctaagatcaagtgtagtat 116  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 75 - 291
Target Start/End: Original strand, 7524968 - 7525185
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatt 7525067  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 273  Q
    ||||||||||||||| |||||| | | ||||||||||| || || ||||  ||||||||| ||| |||||||||| |||| ||   ||||||||||||||    
T  7525068 acttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcaccccacca 7525167  T
Q  274 attcaagtttaaattttt 291  Q
    |||  ||||||| |||||    
T  7525168 attttagtttaatttttt 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 20 - 278
Target Start/End: Original strand, 3643585 - 3643843
Alignment:
Q  20 gagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 119  Q
    |||||| |||||||||| | ||||||||||| |||| ||||| |  |  ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3643585 gagagaaagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctg 3643684  T
Q  120 ttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg-gaggccacttaagtagcttgctactaggc 218  Q
    |||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||| ||  | |    | |||||||||| | ||     
T  3643685 ttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggt 3643784  T
Q  219 ttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattca 278  Q
    |||| | |||| |   |||||||||||||| ||||||| |||||||||||||||||||||    
T  3643785 ttctcgagtgttgcttatgtgttgcactattgcattgg-ctggcgcaccccaccaattca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 1716562 - 1716444
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggacc-aatggttcacacgatatta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatatta 1716463  T
Q  171 aattacttttttgaggggg 189  Q
    |||||||||||| ||||||    
T  1716462 aattacttttttaaggggg 1716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 4103249 - 4103357
Alignment:
Q  79 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactt 178  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctt 4103348  T
Q  179 ttttgaggg 187  Q
    |||| ||||    
T  4103349 tttttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 5350672 - 5350777
Alignment:
Q  108 gtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg-ggaggccacttaagtagc 206  Q
    ||||||||||| || ||||| ||||||||||||||||||||  ||||||| ||||||||||||||||  ||| ||||||||  ||| ||||  |||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  207 ttgcta 212  Q
    ||||||    
T  5350772 ttgcta 5350777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 176  Q
    |||| |||||||||| |||  ||||||||||||||||||| |||||||||    ||||||| ||||| |||| | ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  177 ttttttga 184  Q
    ||||||||    
T  16037959 ttttttga 16037966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgt 146  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 13636366 - 13636426
Alignment:
Q  129 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||||||  || |||||||||    
T  13636366 gtttaatatctgatatgtggatcaacggtccacacggtattaaattaagttcttgaggggg 13636426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 72 - 231
Target Start/End: Complemental strand, 10796000 - 10795840
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||    
T  10796000 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaa 10795901  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcg 231  Q
    |||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    
T  10795900 attacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcg 10795840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 72 - 290
Target Start/End: Complemental strand, 10791762 - 10791543
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||| ||||||||    
T  10791762 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaa 10791663  T
Q  172 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 270  Q
    |||||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    || |||||||||| ||||  ||  ||  |||||||    
T  10791662 attacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggtacacccca 10791563  T
Q  271 ccaattcaagtttaaatttt 290  Q
    ||||||| ||||||| ||||    
T  10791562 ccaattctagtttaactttt 10791543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 75 - 272
Target Start/End: Original strand, 30521242 - 30521440
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |  |||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  175 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 272  Q
      ||||||||||||| ||| |||||    |||||||||| | ||  |||   ||||||||  ||  ||||||||| ||||||| |||||||||||||||    
T  30521342 tattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcattggcctggcgcaccccacc 30521440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 13136608 - 13136752
Alignment:
Q  129 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggggag-gccacttaagtagcttgctactaggcttcttgtgt 227  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||| |  ||||||||||||||  ||||||  |||    
T  13136608 gtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttgt 13136707  T
Q  228 gtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 272  Q
    ||||  |||| |||||||||||||||| || ||||||||||||||    
T  13136708 gtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaat--t 174  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| | | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  175 acttttttgaggg 187  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 11333273 - 11333344
Alignment:
Q  118 tgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 189  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggggg 11333344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 10509478 - 10509551
Alignment:
Q  201 agtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 274  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||  ||| ||||||||||||    
T  10509478 agtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 181  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||| ||||||||||| ||||||||  |||||  |||||  |||||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattacttttt 21216131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 27134511 - 27134625
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 174  Q
    |||||||||| ||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||  ||| |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T
Q  175 acttttttgaggggg 189  Q
    |||||||||||||||    
T  27134611 acttttttgaggggg 27134625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 189
Target Start/End: Original strand, 8128149 - 8128256
Alignment:
Q  81 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactttt 180  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| |  ||||||||| |||||||||| ||||||| |||||| ||||||||||  |||     
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttc 8128247  T
Q  181 ttgaggggg 189  Q
    |||||||||    
T  8128248 ttgaggggg 8128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 123  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 5450 - 5507
Alignment:
Q  129 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 186  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  5450 gtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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