View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_11 (Length: 291)
Name: NF1782_low_11
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 32265532 - 32265796
Alignment:
| Q |
19 |
ttcttccaccattttttcttctcaagtgtttgtgtttgcatttgttgaatgcacaaacccaagaaagaaacannnnnnncgtgtccatcaatttgttgag |
118 |
Q |
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| T |
32265532 |
ttcttccaccattttttcttctcaagtgtttgtgtttgcatttgttgaatgcacaaacccaagaaagaaacatttttttcgtgtccatcaatttgttgaa |
32265631 |
T |
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| Q |
119 |
taaaatacatagtacac--acacacataatgtctcatgataataaaccctttgaagtttgtttcaagaataatagaacggttggttctttaggagtgtgg |
216 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265632 |
taaaatacatagtacacacacacacataatgtctcatgataataaaccctttgaagtttgtttcaagaataatagaacggttggttctttaggagtgtgg |
32265731 |
T |
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| Q |
217 |
attggtgataatccattagactttgtgctccctgtcacattgtgccaaattatcttatatttcat |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265732 |
attggtgataatccattagactttgtgctccctgtcacattgtgccaaattatcttatatttcat |
32265796 |
T |
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