View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_13 (Length: 277)
Name: NF1782_low_13
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 38086099 - 38085842
Alignment:
| Q |
6 |
cagagacataagacagaccctcaaagtcgtggccaccacttcgaattcgaatctgcaggccgtgatattgggaacagattacggttgcttgaatatggga |
105 |
Q |
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| T |
38086099 |
cagagacataagacagaccctcaaagtcgtgaccgccgctgcgaattcgaatctgcaggctgtggtattgggaacaaattacggttgcttgaatatggga |
38086000 |
T |
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| Q |
106 |
aatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaa |
205 |
Q |
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| T |
38085999 |
aatttctagaggtgtgacaattacaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaa |
38085900 |
T |
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| Q |
206 |
ttggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctataga |
263 |
Q |
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| T |
38085899 |
ttggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctataga |
38085842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 38072575 - 38072332
Alignment:
| Q |
20 |
agaccctcaaagtcgtggccaccacttcgaattcgaatctgcaggccgtgatattgggaacagattacggttgcttgaatatgggaaatttctagaggtg |
119 |
Q |
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| T |
38072575 |
agaccctcgaagtcgtggccaccactacgaattcgaatttgcatgccatggtgttgggaacagattatggctgtttgaatatgggaaatttgtgtaggtg |
38072476 |
T |
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| Q |
120 |
tgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaattggctttggtgta |
219 |
Q |
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| T |
38072475 |
tgataatgacaaggggttttggtgtttcattggttgcaaatctgaggttttgaattgaaaatttgagtattgatgagtaagaggaattggtttttgtgta |
38072376 |
T |
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| Q |
220 |
cacaactttagagattgaagtggagttatgtgaatagctataga |
263 |
Q |
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| T |
38072375 |
cacaactttagagattgaagttatgttatgtgaataactataga |
38072332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 38058261 - 38058004
Alignment:
| Q |
6 |
cagagacataagacagaccctcaaagtcgtggccaccacttcgaattcgaatctgcaggccgtgatattgggaacagattacggttgcttgaatatggga |
105 |
Q |
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| T |
38058261 |
cagaaacataggaccgaccctcaaaatcatggccaccgcttcggattcgaatctgcaggttgtggatttgtgaacagattatggttgtttgaatttggga |
38058162 |
T |
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| Q |
106 |
aatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaa |
205 |
Q |
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| T |
38058161 |
aatctgtttaggtgtgataatgaaaagaggtttaggtgttgtgttggatgcaaatctgagattttgagttgtaaatttgagtatcgatgagtaagaggaa |
38058062 |
T |
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| Q |
206 |
ttggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctataga |
263 |
Q |
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| T |
38058061 |
ttggttttggtgtacacaacttcagagattgaagttgagttatgtgaataactataga |
38058004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 6 - 263
Target Start/End: Original strand, 38062193 - 38062450
Alignment:
| Q |
6 |
cagagacataagacagaccctcaaagtcgtggccaccacttcgaattcgaatctgcaggccgtgatattgggaacagattacggttgcttgaatatggga |
105 |
Q |
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| T |
38062193 |
cagaaacataggaccgaccctcgaagtcgtggccgccgcttcggattcgaatctgcaggtcatgtctttgggaacagattatggttgtttgaatttggga |
38062292 |
T |
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| Q |
106 |
aatttctagaggtgtgacaattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaa |
205 |
Q |
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| T |
38062293 |
aatatgtttaggtgtgataatgacaagaggtttcggtgttgttttggatgcaaatctgagattttgagtggtaaattggagtattgatgagtaagaggaa |
38062392 |
T |
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| Q |
206 |
ttggctttggtgtacacaactttagagattgaagtggagttatgtgaatagctataga |
263 |
Q |
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| T |
38062393 |
ttggttttggtgtacacaagtttagacattgaagttgagttatgtgaataactataga |
38062450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 38081657 - 38081425
Alignment:
| Q |
23 |
ccctcaaagtcgtggccaccacttcgaattcgaatctgcaggccgtgatattgggaacagattacggttgcttgaatatgggaaatttctagaggtgtga |
122 |
Q |
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| T |
38081657 |
ccctcaaagtcatggcccccactacgggttcgaatctggaggccatgattttgggaacaaattatggctgtttgaatatgggaaggttctagaggtgtga |
38081558 |
T |
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| Q |
123 |
caattaaaagtggttttggtgttttgttggttgcaaatctgagattttgagttgaaaattggagtattgatgtgtatgatgaattggctttggtgtacac |
222 |
Q |
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| T |
38081557 |
tgatgacaagtggttttggtgttttgtaggatgcaaatcttagattttgagttgtaaatttgagtactggtgagtaagagggattggttttggtgtacac |
38081458 |
T |
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| Q |
223 |
aactttagagattgaagtggagttatgtgaata |
255 |
Q |
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| T |
38081457 |
aactttagagattgaagttgagttatgtgaata |
38081425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 37953923 - 37953867
Alignment:
| Q |
6 |
cagagacataagacagaccctcaaagtcgtggccaccacttcgaattcgaatctgca |
62 |
Q |
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| T |
37953923 |
cagaaacataggacagaccttcgtagtcgtggccaccacttcggattcgaatctgca |
37953867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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