View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_17 (Length: 238)
Name: NF1782_low_17
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 5683621 - 5683763
Alignment:
| Q |
93 |
ctcgagcagcccaaaacagacttgaccaaactgcgttatcaatctttgtaatttatcactagtgaatgactcacatctctcacattcttttcttctttaa |
192 |
Q |
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| T |
5683621 |
ctcgagcagcccaaaacagacttgaccgaactgcgttatcaatctttgtaatttatcacttgtgaatgactcacatctctcacattctt---ttctttaa |
5683717 |
T |
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| Q |
193 |
actccactattgatctacattcatgtacatatccctattgatgttt |
238 |
Q |
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| T |
5683718 |
actccactattgatctacatccatgtacatatccctattgatgttt |
5683763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 5708671 - 5708813
Alignment:
| Q |
93 |
ctcgagcagcccaaaacagacttgaccaaactgcgttatcaatctttgtaatttatcactagtgaatgactcacatctctcacattcttttcttctttaa |
192 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
5708671 |
ctcgagcagcccaaaacagacttgaccgaactgcgttatcaatctttgtaatttatcacttgtgaatgactcacatctctcacattctt---ttctttaa |
5708767 |
T |
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| Q |
193 |
actccactattgatctacattcatgtacatatccctattgatgttt |
238 |
Q |
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| T |
5708768 |
actccactattgatctacatccatgtacatatccctattgatgttt |
5708813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5683121 - 5683197
Alignment:
| Q |
18 |
tttcgtaacataatagttcaaaatcaaaaatcatttgtacttaatgctctaacagagaagttaaggaacttacaact |
94 |
Q |
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| T |
5683121 |
tttcgtaacataatagttcaaaaccaaaaaccatttgtacttaatgctctagcagagcagttaaggaactcacaact |
5683197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5708171 - 5708247
Alignment:
| Q |
18 |
tttcgtaacataatagttcaaaatcaaaaatcatttgtacttaatgctctaacagagaagttaaggaacttacaact |
94 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
5708171 |
tttcgtaacataatagttcaaaaccaaaaaccatttgtacttaatgctctagcagagcagttaaggaactcacaact |
5708247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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