View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_18 (Length: 227)
Name: NF1782_low_18
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5684123 - 5684034
Alignment:
| Q |
1 |
gtggagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc |
90 |
Q |
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| T |
5684123 |
gtggagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc |
5684034 |
T |
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Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 5709173 - 5709084
Alignment:
| Q |
1 |
gtggagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc |
90 |
Q |
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| T |
5709173 |
gtggagtactttatccctgtattgcccgtgtgagtgaggttgattaagtggatgattggtcaaaaatatcattagacagattttgacccc |
5709084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 5683984 - 5683899
Alignment:
| Q |
142 |
aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttt |
227 |
Q |
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| T |
5683984 |
aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttt |
5683899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 5709034 - 5708949
Alignment:
| Q |
142 |
aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttt |
227 |
Q |
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| T |
5709034 |
aatttgttggaatgatcataaaggtaatagtatataactatatatggtatgagacttatcttgatgtatatgtatcattgaccttt |
5708949 |
T |
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