View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1782_low_3 (Length: 486)

Name: NF1782_low_3
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1782_low_3
NF1782_low_3
[»] scaffold0002 (1 HSPs)
scaffold0002 (157-378)||(483856-484076)
[»] chr2 (6 HSPs)
chr2 (157-378)||(7688429-7688649)
chr2 (396-479)||(33855863-33855947)
chr2 (70-116)||(23875170-23875216)
chr2 (68-111)||(40757898-40757941)
chr2 (21-83)||(40727828-40727890)
chr2 (214-247)||(13805233-13805266)
[»] chr6 (1 HSPs)
chr6 (114-378)||(2947459-2947723)
[»] scaffold0057 (1 HSPs)
scaffold0057 (157-378)||(78397-78617)
[»] chr5 (5 HSPs)
chr5 (157-378)||(33260168-33260388)
chr5 (393-480)||(20626074-20626162)
chr5 (396-463)||(23361531-23361598)
chr5 (396-476)||(16511164-16511244)
chr5 (398-462)||(17468963-17469028)
[»] chr1 (10 HSPs)
chr1 (157-378)||(21873191-21873411)
chr1 (157-378)||(6191509-6191729)
chr1 (396-480)||(19883040-19883125)
chr1 (396-479)||(15877862-15877946)
chr1 (404-480)||(26780338-26780416)
chr1 (396-480)||(39440497-39440582)
chr1 (68-112)||(36153902-36153946)
chr1 (398-462)||(15244352-15244417)
chr1 (21-58)||(51976144-51976181)
chr1 (400-463)||(21501991-21502054)
[»] chr3 (5 HSPs)
chr3 (111-378)||(9009037-9009306)
chr3 (393-463)||(4287752-4287823)
chr3 (396-473)||(33797729-33797807)
chr3 (18-103)||(44687727-44687812)
chr3 (389-477)||(32202797-32202886)
[»] chr7 (9 HSPs)
chr7 (157-378)||(16434884-16435104)
chr7 (396-471)||(5057085-5057161)
chr7 (396-479)||(23103735-23103819)
chr7 (393-471)||(7228705-7228783)
chr7 (396-480)||(45956714-45956799)
chr7 (388-480)||(23627769-23627862)
chr7 (68-110)||(5063323-5063365)
chr7 (396-468)||(16253131-16253204)
chr7 (396-480)||(29542102-29542187)
[»] chr4 (7 HSPs)
chr4 (111-291)||(25028263-25028449)
chr4 (111-289)||(25034302-25034487)
chr4 (396-480)||(20570543-20570628)
chr4 (396-479)||(51461638-51461722)
chr4 (396-468)||(5066873-5066946)
chr4 (396-471)||(11489332-11489408)
chr4 (399-480)||(19940906-19940988)
[»] chr8 (6 HSPs)
chr8 (396-480)||(37378995-37379080)
chr8 (396-477)||(22541638-22541720)
chr8 (396-481)||(25233748-25233834)
chr8 (398-471)||(16072880-16072953)
chr8 (397-430)||(25988915-25988948)
chr8 (64-96)||(32574810-32574842)
[»] scaffold0051 (1 HSPs)
scaffold0051 (62-103)||(15059-15100)


Alignment Details
Target: scaffold0002 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 157 - 378
Target Start/End: Complemental strand, 484076 - 483856
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  484076 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttgttttttgt 483977  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||||    
T  483976 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgactgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 483878  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  483877 acaatgatgattttgctgtgga 483856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 157 - 378
Target Start/End: Complemental strand, 7688649 - 7688429
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  7688649 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttgttttttgt 7688550  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||||    
T  7688549 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgactgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 7688451  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  7688450 acaatgatgattttgctgtgga 7688429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 33855947 - 33855863
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatct 479  Q
    ||||||||||||||||||||| |||||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  33855947 aaggattgtaatcttgtactagctctatctaatctatcaatttagcttttcatgttttcatttatgtttatctccatcttcatct 33855863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 23875216 - 23875170
Alignment:
Q  70 atggtgggaaaaaacttctcattcccaggctaaatgccaccatgttt 116  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||    
T  23875216 atggtgggaaaaaacttctcattccaaggctaaatgccaccttgttt 23875170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 40757898 - 40757941
Alignment:
Q  68 ccatggtgggaaaaaacttctcattcccaggctaaatgccacca 111  Q
    ||||||||| |||||||||||||||||||| |||||||||||||    
T  40757898 ccatggtggaaaaaaacttctcattcccagactaaatgccacca 40757941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 40727828 - 40727890
Alignment:
Q  21 ttcacaacctgcagcaactgccacctgcctggaaaaaagggattttaccatggtgggaaaaaa 83  Q
    ||||||||||| |||||||||||| ||||||||||||||  | ||| | ||||||||||||||    
T  40727828 ttcacaacctgtagcaactgccacgtgcctggaaaaaagtcacttttctatggtgggaaaaaa 40727890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 247
Target Start/End: Complemental strand, 13805266 - 13805233
Alignment:
Q  214 ttctgcagttgagataactttttcaattgatttt 247  Q
    ||||||||||||||||||||||||||||| ||||    
T  13805266 ttctgcagttgagataactttttcaattgctttt 13805233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 114 - 378
Target Start/End: Complemental strand, 2947723 - 2947459
Alignment:
Q  114 tttcaaagccaatctcataatttgacatttgtagagag--tagaattttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgc 211  Q
    ||||| ||||||||||||||||||||||||||||||||  |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||    
T  2947723 tttcacagccaatctcataatttgacatttgtagagagagtagaattttgaacgaacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgc 2947624  T
Q  212 gtttctgcagttgagataactttttcaattgattttggtttttgtagttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagact 311  Q
     ||| || ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||  |||||||| ||||    
T  2947623 ttttatg-agttgagataactttttcaattgattttgttttttgtagatgaaaattgattatgatgtggttgagatgagacattgccggtgcttacgact 2947525  T
Q  312 gagatgaaatgagatgnnnnnnngcagctgaagcttagcatatttacaatgatgattttgctgtgga 378  Q
    ||||||||||||||||       | ||||||||| ||||||||||||||||||||||||||||||||    
T  2947524 gagatgaaatgagatg-ctttttgtagctgaagcctagcatatttacaatgatgattttgctgtgga 2947459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 164; Significance: 2e-87; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 157 - 378
Target Start/End: Complemental strand, 78617 - 78397
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  78617 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttgttttttgt 78518  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||||    
T  78517 agatgaaaattgattatgatgttgctgagatgagacattgtcggtgcttacgactgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 78419  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  78418 acaatgatgattttgctgtgga 78397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 157 - 378
Target Start/End: Complemental strand, 33260388 - 33260168
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  33260388 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttgttttttgt 33260289  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||       ||||||||||||||||||||||    
T  33260288 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgtctgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 33260190  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  33260189 acaatgatgattttgctgtgga 33260168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 393 - 480
Target Start/End: Original strand, 20626074 - 20626162
Alignment:
Q  393 tttaaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttcatctc 480  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  20626074 tttaaggactgtaatcttgtactaactctatttaatcttttaatttaacttttcatgttttcatttatgtttatcttcatcttcatctc 20626162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 396 - 463
Target Start/End: Original strand, 23361531 - 23361598
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttcatgttttcatttatgttt 463  Q
    ||||||||||||||||||||| || ||||| |||| | ||||||| ||||||||||||||||||||||    
T  23361531 aaggattgtaatcttgtactagctatatttcatctatcaatttagttttcatgttttcatttatgttt 23361598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 476
Target Start/End: Original strand, 16511164 - 16511244
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttca 476  Q
    ||||||||||||||||||||| || ||||| |||| | |||||||| ||||||||||||||||||||||   ||||||||||    
T  16511164 aaggattgtaatcttgtactagctttattt-atctatcaatttagcttttcatgttttcatttatgttttatttcatcttca 16511244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 17468963 - 17469028
Alignment:
Q  398 ggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtt 462  Q
    ||||||||||||  ||||| |||||||| || | ||||||||| ||| ||||||||||||||||||    
T  17468963 ggattgtaatctattactagctctattttatatattaatttagtttttcatgttttcatttatgtt 17469028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 157 - 378
Target Start/End: Complemental strand, 21873411 - 21873191
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  21873411 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttgttttttgt 21873312  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||       ||||||||||||||||||||||    
T  21873311 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgtctgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 21873213  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  21873212 acaatgatgattttgctgtgga 21873191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 157 - 378
Target Start/End: Original strand, 6191509 - 6191729
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||  |||| |||||||    
T  6191509 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttgtcaattgcatttgttttttgt 6191608  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||       ||||||||||||||||||||||    
T  6191609 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgactgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 6191707  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  6191708 acaatgatgattttgctgtgga 6191729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 19883125 - 19883040
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatcttcatcttcatctc 480  Q
    |||||||||||| |||||||| |||||||| |||| | ||||||| |||| |||||||||||||| ||||| ||||||||||||||    
T  19883125 aaggattgtaattttgtactagctctatttgatctatcaatttagttttctatgttttcatttatttttattttcatcttcatctc 19883040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 15877862 - 15877946
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttcatct 479  Q
    |||||||||||||||||||||  |||| | ||||| |||||||||| |||||| |||||||||||||||   |||||||||||||    
T  15877862 aaggattgtaatcttgtactagatctactcaatctattaatttagcttttcatattttcatttatgttttatttcatcttcatct 15877946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 404 - 480
Target Start/End: Complemental strand, 26780416 - 26780338
Alignment:
Q  404 taatcttgtactaactctatttaatcttttaatttagcttt--catgttttcatttatgtttatcttcatcttcatctc 480  Q
    |||| |||||||| ||||||||||||| | ||||||| |||  |||| |||||||||||||||| ||||||| ||||||    
T  26780416 taattttgtactagctctatttaatctatcaatttagttttttcatgctttcatttatgtttattttcatctccatctc 26780338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 39440582 - 39440497
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatctc 480  Q
    ||||||||||||||||||||| || ||||| || | | ||||||| ||| |||||||| ||||||||||   ||||||||||||||    
T  39440582 aaggattgtaatcttgtactagctttattttatatatcaatttagtttttcatgtttttatttatgtttcatttcatcttcatctc 39440497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 36153902 - 36153946
Alignment:
Q  68 ccatggtgggaaaaaacttctcattcccaggctaaatgccaccat 112  Q
    |||||||||||||||||| |  |||||||||||||||||||||||    
T  36153902 ccatggtgggaaaaaactccctattcccaggctaaatgccaccat 36153946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 15244352 - 15244417
Alignment:
Q  398 ggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtt 462  Q
    ||||||||||||| || ||||| ||||| |||| | ||||||| ||| ||||||||||||||||||    
T  15244352 ggattgtaatcttctattaactatattttatctatcaatttagtttttcatgttttcatttatgtt 15244417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 51976144 - 51976181
Alignment:
Q  21 ttcacaacctgcagcaactgccacctgcctggaaaaaa 58  Q
    |||||||  |||||||||||||||||||||||||||||    
T  51976144 ttcacaaattgcagcaactgccacctgcctggaaaaaa 51976181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 463
Target Start/End: Original strand, 21501991 - 21502054
Alignment:
Q  400 attgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgttt 463  Q
    |||||||| |||||||| || |||||| ||| |||||||| |||| |||||||||||||||||||    
T  21501991 attgtaatattgtactagctatattta-tctattaatttaacttttcatgttttcatttatgttt 21502054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 111 - 378
Target Start/End: Complemental strand, 9009306 - 9009037
Alignment:
Q  111 atgtttcaaagccaatctcataatttgacatttgtaga--gagtagaattttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaag 208  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| || ||| |||| |||||||||||||||| |||||    
T  9009306 atgtttcaaagccaatctcataatttgacatttgtagaaagagtagaattttgaacggacttgtagctgtctcaatgcgtggtggttttggtgtatcaag 9009207  T
Q  209 tgcgtttctgcagttgagataactttttcaattgattttggtttttgtagttg-aaaattgattatgatgtggctgagatgagacattgttggtgcttaa 307  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||     
T  9009206 tgcgtttctgtagttgagataactttttcaactgattttgttttttgcagttgaaaaattgattatgatgtggctgagatgagatattgtcggtgcttat 9009107  T
Q  308 gactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatatttacaatgatgattttgctgtgga 378  Q
    ||||||||||| ||||||||       |||| ||||||||||||||||||||||||||||| |||||||||    
T  9009106 gactgagatgagatgagatg-ctttttgcagttgaagcttagcatatttacaatgatgattctgctgtgga 9009037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 463
Target Start/End: Complemental strand, 4287823 - 4287752
Alignment:
Q  393 tttaaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgttt 463  Q
    |||||||||||||||||||||||| || |||| ||||| |||||||||| |||||||||||  |||||||||    
T  4287823 tttaaggattgtaatcttgtactagctttattaaatctattaatttagcttttcatgtttttgtttatgttt 4287752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 396 - 473
Target Start/End: Original strand, 33797729 - 33797807
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatcttcatct 473  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||  |||| |||||||||||||| ||||  |||||||    
T  33797729 aaggattgtaatcttatactaactctatttaatctatcaatttacttttctatgttttcatttatttttaatttcatct 33797807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 44687812 - 44687727
Alignment:
Q  18 gtattcacaacctgcagcaactgccacctgcctggaaaaaagggattttaccatggtgggaaaaaacttctcattcccaggctaaa 103  Q
    ||||||||||| |||||||||||||||||  ||||||||| || | ||| |||| | || |||||||||  |||||||||| ||||    
T  44687812 gtattcacaacttgcagcaactgccacctatctggaaaaatggcacttttccatagaggaaaaaaactttccattcccaggttaaa 44687727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 477
Target Start/End: Complemental strand, 32202886 - 32202797
Alignment:
Q  389 ttcatttaaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatcttcatcttcat 477  Q
    |||||||||||||||||||||| |   |||||||| || ||| ||||| ||| |||| |||||||||||||| |  |||||||| |||||    
T  32202886 ttcatttaaggattgtaatcttttgacaactctatctattctattaatatagttttctatgttttcatttatttccatcttcattttcat 32202797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 5e-85; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 157 - 378
Target Start/End: Original strand, 16434884 - 16435104
Alignment:
Q  157 ttttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaagtgcgtttctgcagttgagataactttttcaattgattttggtttttgt 256  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  16434884 ttttgaacggacttgtatctgtcttaatgtgtggtggttttggtgtgtcaagtgcgtttatgcagttgagataactttttcaattgattttattttttgt 16434983  T
Q  257 agttgaaaattgattatgatgtggctgagatgagacattgttggtgcttaagactgagatgaaatgagatgnnnnnnngcagctgaagcttagcatattt 356  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||       ||||||||||||||||||||||    
T  16434984 agatgaaaattgattatgatgtggctgagatgagacattgtcggtgcttacgtctgagatgaaatgagatg-ctttttgcagctgaagcttagcatattt 16435082  T
Q  357 acaatgatgattttgctgtgga 378  Q
    ||||||||||||||||||||||    
T  16435083 acaatgatgattttgctgtgga 16435104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 5057161 - 5057085
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatcttcat 471  Q
    ||||||||||||||||| |||||| |||||||||| | ||||||| |||| |||||||||||||||||||| |||||    
T  5057161 aaggattgtaatcttgtcctaactatatttaatctatcaatttagttttctatgttttcatttatgtttatattcat 5057085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 23103735 - 23103819
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttcatct 479  Q
    ||||||||||||||||||||| ||||||| ||||| ||| |||||| ||| ||||||||||||||||||   |||||||||||||    
T  23103735 aaggattgtaatcttgtactagctctattcaatctattactttagctttttatgttttcatttatgttttatttcatcttcatct 23103819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 393 - 471
Target Start/End: Original strand, 7228705 - 7228783
Alignment:
Q  393 tttaaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcat 471  Q
    |||||||||||||||||||||||| |||| |||||||| |  ||||| |||| |||||||||||||||||||||||||||    
T  7228705 tttaaggattgtaatcttgtactacctct-tttaatctatcgatttaacttttcatgttttcatttatgtttatcttcat 7228783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 396 - 480
Target Start/End: Original strand, 45956714 - 45956799
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttcatctc 480  Q
    ||||||||||| |||||||||| |||||||||||| | |||||||| ||||||||||| ||||||||||  ||||| | |||||||    
T  45956714 aaggattgtaaccttgtactaattctatttaatctatcaatttagcttttcatgtttttatttatgttttccttcaccctcatctc 45956799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 480
Target Start/End: Original strand, 23627769 - 23627862
Alignment:
Q  388 tttcatttaaggattgtaatcttgtactaactctatttaatcttttaattt-agctttcatgttttcatttatgtttatcttcatcttcatctc 480  Q
    |||| ||||||||||||||| || |||||  |||||||||||| ||||||| |  ||| || |||| || ||||||||||||| ||||||||||    
T  23627769 tttcctttaaggattgtaattttatactagttctatttaatctattaatttaattttttatatttttatgtatgtttatcttcgtcttcatctc 23627862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 5063365 - 5063323
Alignment:
Q  68 ccatggtgggaaaaaacttctcattcccaggctaaatgccacc 110  Q
    ||||||||||||||||| || |||| |||||||||||||||||    
T  5063365 ccatggtgggaaaaaacatcccatttccaggctaaatgccacc 5063323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 16253131 - 16253204
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatctt 468  Q
    ||||||||||||||| |   |||||||| |||||| | ||||||| |||| ||||||||||||||||| |||||    
T  16253131 aaggattgtaatcttatgacaactctatctaatctatcaatttagttttctatgttttcatttatgttcatctt 16253204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 29542187 - 29542102
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatctc 480  Q
    |||||||||||| | |||||| |||||||| |||| | ||||||  ||| ||||||||||| |||||||   ||||||||||||||    
T  29542187 aaggattgtaatatcgtactagctctattttatctatcaatttaatttttcatgttttcatctatgtttcatttcatcttcatctc 29542102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 291
Target Start/End: Complemental strand, 25028449 - 25028263
Alignment:
Q  111 atgtttcaaagccaatctcataatttgacatttgtagagag--tagaattttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaag 208  Q
    ||||||||||| |||||||| ||||||||||||||| ||||  ||||||||||||  ||||||||  | |||||||||||||||||||  |||||| |||    
T  25028449 atgtttcaaagtcaatctcaaaatttgacatttgtatagagattagaattttgaacagacttgtagttgtcttaatgtgtggtggtttgtgtgtgtgaag 25028350  T
Q  209 tgcgtttctgcagttgagataactttttcaattga----ttttggtttttgtagttgaaaattgattatgatgtggctgagatgaga 291  Q
    ||  |||||| | |||||||| ||| |||||||||    ||||  |||||| ||  ||||||| ||| |||||||||||||||||||    
T  25028349 tgtctttctgtaattgagatagcttgttcaattgatatttttttttttttgcagcggaaaatttattctgatgtggctgagatgaga 25028263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 289
Target Start/End: Original strand, 25034302 - 25034487
Alignment:
Q  111 atgtttcaaagccaatctcataatttgacatttgtagagag--tagaattttgaatggacttgtatctatcttaatgtgtggtggttttggtgtgtcaag 208  Q
    ||||||||| | |||||||| ||||||||||||||||||||  ||||||||||||  ||||||||  | |||||||| |||||| ||| ||||||| |||    
T  25034302 atgtttcaatgtcaatctcagaatttgacatttgtagagagattagaattttgaacagacttgtagttgtcttaatgagtggtgatttgggtgtgtgaag 25034401  T
Q  209 tgcgtttctgcagttgagataactttttcaattga-----ttttggtttttgtagttgaaaattgattatgatgtggctgagatga 289  Q
    || ||||||| ||||   ||| |||||| ||||||     ||||  |||||| || |||||||| ||| |||||||||||||||||    
T  25034402 tgtgtttctgtagtttctatagcttttttaattgattttttttttttttttgcagctgaaaatttattctgatgtggctgagatga 25034487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 480
Target Start/End: Original strand, 20570543 - 20570628
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatctc 480  Q
    ||||||||||||||||||||| |||| |||||||  | |||||  |||| ||||||||||||||||||||| ||||||||||||||    
T  20570543 aaggattgtaatcttgtactagctctttttaatcaatcaatttcacttttcatgttttcatttatgtttatattcatcttcatctc 20570628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 51461638 - 51461722
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatct 479  Q
    |||||||||||| |||||| | |  |||||||||| ||||||||||||| |||||||||||||||||||  ||||||||||||||    
T  51461638 aaggattgtaatattgtacaatcattatttaatctattaatttagcttttcatgttttcatttatgttttccttcatcttcatct 51461722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 5066873 - 5066946
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatctt 468  Q
    ||||||||||||| ||  ||||||||||||||||| | ||||||| |||| ||||||| |||||||||||||||    
T  5066873 aaggattgtaatcatgagctaactctatttaatctatcaatttagttttctatgttttgatttatgtttatctt 5066946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 471
Target Start/End: Complemental strand, 11489408 - 11489332
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcat 471  Q
    ||||||||||||||||| |||||| ||||| |||| | ||||||| ||| ||| |||||||||||||| ||||||||    
T  11489408 aaggattgtaatcttgtgctaactgtatttgatctatcaatttagttttccatattttcatttatgttcatcttcat 11489332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 19940988 - 19940906
Alignment:
Q  399 gattgtaatcttgtactaactctatttaatcttttaatttagc-tttcatgttttcatttatgtttatcttcatcttcatctc 480  Q
    ||||||||||||||||  ||||||||| |||| | |||||||| |||||||||||||||||| |||   |||| |||||||||    
T  19940988 gattgtaatcttgtacatactctattttatctctcaatttagcttttcatgttttcatttatttttcatttcaccttcatctc 19940906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 480
Target Start/End: Complemental strand, 37379080 - 37378995
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatctc 480  Q
    ||||||||||||||||||||| ||||||||||||| | ||||||| ||| |||||||| | |||||||||| ||||||| ||||||    
T  37379080 aaggattgtaatcttgtactagctctatttaatctatcaatttagttttccatgtttttacttatgtttattttcatctccatctc 37378995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 477
Target Start/End: Original strand, 22541638 - 22541720
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcat 477  Q
    |||||| |||||||||||||  ||||||||||||| | | ||||||||| ||||||||||||||||||||| || ||||||||    
T  22541638 aaggatcgtaatcttgtactggctctatttaatctatcagtttagcttttcatgttttcatttatgtttatgtttatcttcat 22541720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 25233748 - 25233834
Alignment:
Q  396 aaggattgtaatcttgtactaactctatttaatcttttaatttagcttt-catgttttcatttatgtttatcttcatcttcatctca 481  Q
    ||||||||||||| ||||||| || |||||||| | | ||||||| ||| ||| ||||||||||||||||| |||||||||||||||    
T  25233748 aaggattgtaatcatgtactagctttatttaatatatcaatttagtttttcatcttttcatttatgtttattttcatcttcatctca 25233834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 16072880 - 16072953
Alignment:
Q  398 ggattgtaatcttgtactaactctatttaatcttttaatttagctttc-atgttttcatttatgtttatcttcat 471  Q
    ||||||||| ||||| ||||||||||||||||| | ||||||| |||| |||||| |||||||||| ||||||||    
T  16072880 ggattgtaa-cttgtgctaactctatttaatctatcaatttagttttctatgtttccatttatgttcatcttcat 16072953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 25988915 - 25988948
Alignment:
Q  397 aggattgtaatcttgtactaactctatttaatct 430  Q
    ||||||||||||||||||||||||||||||||||    
T  25988915 aggattgtaatcttgtactaactctatttaatct 25988948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 32574810 - 32574842
Alignment:
Q  64 tttaccatggtgggaaaaaacttctcattccca 96  Q
    ||||||||||||||||| |||||||||||||||    
T  32574810 tttaccatggtgggaaacaacttctcattccca 32574842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 103
Target Start/End: Original strand, 15059 - 15100
Alignment:
Q  62 attttaccatggtgggaaaaaacttctcattcccaggctaaa 103  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||    
T  15059 attttcccatggtgggaaagaacttctcattcccatgctaaa 15100  T

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