View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_4 (Length: 474)
Name: NF1782_low_4
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 60 - 277
Target Start/End: Original strand, 45126940 - 45127157
Alignment:
| Q |
60 |
gtgtgtgtttttaatgtgcaatcttaatttaattacccgcaaatagatcgaggaaaaagaaattaaggttcttataaataggccctttgtttatgctatg |
159 |
Q |
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| T |
45126940 |
gtgtgtgtttttaatgtgcaatcttaatttaattacccgcaaatagatcgaggaaaaagaaattaaggttcttataaataggccctttgtttatgctatg |
45127039 |
T |
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| Q |
160 |
catttgaggtcccataatggcaacgaatcaaccgtctctttctgattggaattgagcatgatatatactgtcccttcatttggacaacattgatgaagtt |
259 |
Q |
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| T |
45127040 |
catttgaggtcccataatggcaaggaatcaaccgtctctttctgattggaattgagcatgatatatactgtcccttcatttggacaacattgatgaagtt |
45127139 |
T |
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| Q |
260 |
cgttattatctaagctag |
277 |
Q |
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| T |
45127140 |
cgttattatctaagctag |
45127157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 373 - 458
Target Start/End: Original strand, 45127541 - 45127625
Alignment:
| Q |
373 |
cgggcttaattaatggctcattagttcatagttttacaataaagggatggcttgagtggaaacaccaaaataatcttcaaagaatt |
458 |
Q |
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| T |
45127541 |
cgggcttaattaatggctcattagttcatagtta-acaataaagggatggcttgagtggaaacaccaaaataatcttcaaagaatt |
45127625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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