View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1782_low_5 (Length: 416)

Name: NF1782_low_5
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1782_low_5
NF1782_low_5
[»] chr8 (16 HSPs)
chr8 (18-377)||(37681898-37682258)
chr8 (177-385)||(10944297-10944506)
chr8 (177-395)||(40054312-40054531)
chr8 (177-378)||(41841058-41841259)
chr8 (86-375)||(37679666-37679953)
chr8 (177-291)||(44878983-44879097)
chr8 (177-291)||(44880824-44880938)
chr8 (194-289)||(44582870-44582965)
chr8 (177-250)||(42220880-42220952)
chr8 (193-277)||(42555090-42555174)
chr8 (231-283)||(44583111-44583162)
chr8 (177-220)||(42872514-42872557)
chr8 (177-250)||(42092021-42092093)
chr8 (237-291)||(42554655-42554709)
chr8 (328-393)||(42872408-42872471)
chr8 (89-133)||(37677755-37677799)
[»] chr2 (25 HSPs)
chr2 (177-405)||(30732008-30732237)
chr2 (179-393)||(30733990-30734205)
chr2 (177-377)||(32918080-32918281)
chr2 (177-377)||(43850049-43850250)
chr2 (177-394)||(9020847-9021065)
chr2 (177-291)||(2841010-2841124)
chr2 (177-393)||(9026786-9027003)
chr2 (177-394)||(8973312-8973530)
chr2 (177-393)||(9008021-9008238)
chr2 (179-324)||(19232359-19232504)
chr2 (184-284)||(10763878-10763978)
chr2 (184-291)||(9030405-9030512)
chr2 (177-250)||(9032053-9032126)
chr2 (177-258)||(9023447-9023528)
chr2 (177-244)||(8979322-8979389)
chr2 (184-290)||(8992155-8992262)
chr2 (185-289)||(8988463-8988568)
chr2 (192-291)||(9016508-9016611)
chr2 (205-288)||(17225659-17225743)
chr2 (177-244)||(8984693-8984760)
chr2 (179-284)||(6471709-6471813)
chr2 (194-291)||(35701906-35702003)
chr2 (208-291)||(17275862-17275945)
chr2 (232-314)||(8912989-8913074)
chr2 (337-393)||(8992294-8992349)
[»] chr1 (21 HSPs)
chr1 (177-405)||(14669587-14669816)
chr1 (177-405)||(14706088-14706317)
chr1 (177-384)||(14708578-14708786)
chr1 (177-402)||(14654222-14654447)
chr1 (177-402)||(14664013-14664238)
chr1 (177-405)||(14683750-14683979)
chr1 (174-402)||(14652522-14652752)
chr1 (174-402)||(14662313-14662543)
chr1 (177-385)||(14716291-14716500)
chr1 (179-371)||(14681601-14681794)
chr1 (177-371)||(14674481-14674676)
chr1 (177-402)||(14679859-14680085)
chr1 (177-393)||(38175420-38175637)
chr1 (177-385)||(28366097-28366306)
chr1 (177-393)||(14667007-14667218)
chr1 (177-314)||(33988070-33988208)
chr1 (177-272)||(14676632-14676727)
chr1 (184-294)||(11872471-11872581)
chr1 (184-255)||(37422176-37422247)
chr1 (177-249)||(28698553-28698625)
chr1 (231-290)||(14703134-14703193)
[»] chr4 (15 HSPs)
chr4 (177-378)||(11652298-11652499)
chr4 (177-384)||(49106428-49106636)
chr4 (177-384)||(3461042-3461249)
chr4 (177-324)||(50077158-50077306)
chr4 (177-392)||(49108524-49108740)
chr4 (178-289)||(26998735-26998846)
chr4 (178-283)||(26984668-26984773)
chr4 (178-289)||(48205832-48205943)
chr4 (205-291)||(21503706-21503792)
chr4 (179-282)||(41013548-41013651)
chr4 (184-284)||(26982549-26982646)
chr4 (213-286)||(35806165-35806238)
chr4 (241-284)||(54677590-54677633)
chr4 (234-284)||(34481105-34481155)
chr4 (184-237)||(6431957-6432010)
[»] chr5 (8 HSPs)
chr5 (177-393)||(7524968-7525185)
chr5 (177-380)||(3643640-3643843)
chr5 (177-291)||(1716444-1716559)
chr5 (184-289)||(4103252-4103357)
chr5 (210-314)||(5350672-5350777)
chr5 (179-286)||(16037861-16037966)
chr5 (183-248)||(19261152-19261217)
chr5 (231-291)||(13636366-13636426)
[»] chr6 (8 HSPs)
chr6 (177-333)||(10795840-10795997)
chr6 (177-392)||(10791543-10791759)
chr6 (172-374)||(30521237-30521440)
chr6 (231-374)||(13136608-13136752)
chr6 (179-289)||(8875691-8875803)
chr6 (220-291)||(11333273-11333344)
chr6 (303-376)||(10509478-10509551)
chr6 (183-283)||(21216031-21216131)
[»] chr7 (2 HSPs)
chr7 (171-291)||(27134505-27134625)
chr7 (184-291)||(8128150-8128256)
[»] scaffold0549 (1 HSPs)
scaffold0549 (231-288)||(5450-5507)
[»] chr3 (1 HSPs)
chr3 (179-225)||(15758562-15758608)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 37681898 - 37682258
Alignment:
Q  18 taaatctagtgcggctgagggatctattggtagctgcattggactttagaaagnnnnnnntagcatagtactcatgagttctatgtgccacattgcttag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  37681898 taaatctagtgcggctgagggatctattggtagctgcattggactttagaaagaaaaaaatagcatagtactcatgagttctatgtgccacattgcttag 37681997  T
Q  118 ttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatttctcggccttttggctaagatcaagtgtagta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37681998 ttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatttctcggccttttggctaagatcaagtgtagta 37682097  T
Q  218 tctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg-ggggaggccacttaagtagcttgctact 316  Q
    |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||  |||||| |||  | ||| ||||  || |||||||||| |    
T  37682098 tctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgtttttttaggatgagagtccaccaaaatagcttgctatt 37682197  T
Q  317 aggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaat 377  Q
    |||  |||   ||||| ||  |  |||||||||| ||||||||||||||| ||||||||||    
T  37682198 aggtctctcaagtgtcatctttacgttgcactattgcattggtctggcgcgccccaccaat 37682258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 177 - 385
Target Start/End: Complemental strand, 10944506 - 10944297
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||    
T  10944506 tcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaatt 10944407  T
Q  277 acttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||||||| |||| || |||| || |||||||||||||||||||||||| |||||   | || ||||||||||||||||||| |||||||||||||||    
T  10944406 acttttttgatggggagaagccattttagtagcttgctactaggcttcttgagtgtcactattgcgttgcactatagcattggtttggcgcaccccacca 10944307  T
Q  376 attcaagttt 385  Q
    ||||||||||    
T  10944306 attcaagttt 10944297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 177 - 395
Target Start/End: Original strand, 40054312 - 40054531
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||||||||| | |||||||||| | ||||||||  ||||||   |||||||||||||| ||||  |  |||||||||||||||    
T  40054412 acttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccacca 40054511  T
Q  376 attcaagtttaaatttttat 395  Q
    || | |||| || |||||||    
T  40054512 atactagttcaattttttat 40054531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 177 - 378
Target Start/End: Complemental strand, 41841259 - 41841058
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  41841259 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaatt 41841160  T
Q  277 acttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||||||| |||| || |||||   | |||||||||| | ||||||| | |||||| | |||||||||||||| ||| ||| ||||||||||||| ||    
T  41841159 acttttttgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccatca 41841061  T
Q  376 att 378  Q
    |||    
T  41841060 att 41841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 86 - 375
Target Start/End: Original strand, 37679666 - 37679953
Alignment:
Q  86 tactcatgagttctatgtgccacattgcttagttgaaacaacaagtaccgatgctttgtgatataaaacaagagtttattctcttcacaaatcatacatt 185  Q
    |||||||||||| ||||| |||||||| ||||  |||| ||||||||| || ||||||   ||||||| ||||||| | |  | | |||| | |||| ||    
T  37679666 tactcatgagttttatgtcccacattggttagaagaaataacaagtactgaagctttgc--tataaaataagagttcaattacataacaatttatacctt 37679763  T
Q  186 tctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttg 285  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||  |||||||||||  ||| |||    
T  37679764 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaatttatttattg 37679863  T
Q  286 aggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||| ||||||||    ||||||||||| | ||| || | ||||||| |  ||||||||||||||||| ||||||||||||||||||||    
T  37679864 agggggagaggccaccacggtagcttgctattgggcctc-tctgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccacca 37679953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 44878983 - 44879097
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| |||||||||||    
T  44878983 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44879082  T
Q  277 acttttttgaggggg 291  Q
    |||||||||||||||    
T  44879083 acttttttgaggggg 44879097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 44880938 - 44880824
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| ||||| |||||||||||    
T  44880938 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44880839  T
Q  277 acttttttgaggggg 291  Q
    |||||||||||||||    
T  44880838 acttttttgaggggg 44880824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 44582870 - 44582965
Alignment:
Q  194 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggg 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||| |   | ||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtagctcaatggattctatgatattaaattacttttttgaggg 44582965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 42220952 - 42220880
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 250  Q
    |||||||||| |||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  42220952 tcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgatatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 42555174 - 42555090
Alignment:
Q  193 cttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 277  Q
    |||||||||||||||||||| || ||||||| ||||| ||||||||| ||||||||||  |||||  ||||||||||||||||||    
T  42555174 cttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaaatta 42555090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 44583111 - 44583162
Alignment:
Q  231 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    ||||||||||||||||||| || |||||| |||||||||||||||||||||||    
T  44583111 gtttaatatctgatatgtgaac-aatggtacacacgatattaaattacttttt 44583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 42872557 - 42872514
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatct 220  Q
    |||||| ||||||||||||||||||||||| |||||||||||||    
T  42872557 tcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 42092021 - 42092093
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 250  Q
    |||||| |||||  |||||||| |||| || ||||||| ||| |||||||||| ||||||||||||||||||||    
T  42092021 tcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 42554709 - 42554655
Alignment:
Q  237 tatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    ||||||||||||||  |||||  | |||||||||||||||| |||||||||||||    
T  42554709 tatctgatatgtgggtcaatgaattacacgatattaaattatttttttgaggggg 42554655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 42872471 - 42872408
Alignment:
Q  328 gtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 393  Q
    |||||||| |||||||||||||| ||| ||| ||| ||||||||||||||| |||||||| |||||    
T  42872471 gtgtcgtctatgtgttgcactattgca-tgggctgacgcaccccaccaatt-aagtttaatttttt 42872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 37677755 - 37677799
Alignment:
Q  89 tcatgagttctatgtgccacattgcttagttgaaacaacaagtac 133  Q
    ||||||||||||||| |||||||| || | |||||||||||||||    
T  37677755 tcatgagttctatgtcccacattggttggatgaaacaacaagtac 37677799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 177 - 405
Target Start/End: Original strand, 30732008 - 30732237
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  30732008 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 30732107  T
Q  277 acttttttga-ggggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  30732108 acttttttgagggggggaggccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcaccccacca 30732207  T
Q  376 attcaagtttaaatttttattctggttcat 405  Q
    ||||||||||||||||||||||||||||||    
T  30732208 attcaagtttaaatttttattctggttcat 30732237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 179 - 393
Target Start/End: Original strand, 30733990 - 30734205
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  30733990 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattac 30734089  T
Q  279 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaat 377  Q
    |||||| |||||| || |||| || |||||||||||||||||||||| | |||||| || || |||||||||| |||||||  |||||||||||||||||    
T  30734090 tttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcaccccaccaat 30734189  T
Q  378 tcaagtttaaattttt 393  Q
     |||||| ||||||||    
T  30734190 ccaagttcaaattttt 30734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 32918080 - 32918281
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  32918080 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 32918179  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| || |||| |  ||||||||||||||  ||||||  |||||||  |||| |||||||||||||||| || ||||||||| |||||    
T  32918180 acttttttgagggggagaagccattgcagtagcttgctactctgcttctcttgtgtcgctaatgcgttgcactatagcattagtttggcgcacctcacca 32918279  T
Q  376 at 377  Q
    ||    
T  32918280 at 32918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 43850049 - 43850250
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  ||||| ||||||||||     
T  43850049 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatc 43850148  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||| ||||| | |||||||||| | | |||||  ||||||| | ||| |||||||||| |||| ||  |||||||||| ||||    
T  43850149 acttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcataggcttggcgcacccaacca 43850248  T
Q  376 at 377  Q
    ||    
T  43850249 at 43850250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 177 - 394
Target Start/End: Original strand, 9020847 - 9021065
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaat 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||| ||||||| |||| ||  ||||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaat 9020946  T
Q  276 tacttttttgaggg-gggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    |||||||||||||| | ||||||| || | || ||||||| | |||||||   |||||  | |||||||||||||| |||| ||| ||| ||||||||||    
T  9020947 tacttttttgagggtgagaggccatttcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt-tggtgcaccccacc 9021045  T
Q  375 aattcaagtttaaattttta 394  Q
    |||||||||| |||||||||    
T  9021046 aattcaagttcaaattttta 9021065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 2841124 - 2841010
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||| |||||||||||||||||    
T  2841124 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaatt 2841025  T
Q  277 acttttttgaggggg 291  Q
    |||||||||||||||    
T  2841024 acttttttgaggggg 2841010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 177 - 393
Target Start/End: Original strand, 9026786 - 9027003
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaat 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||| ||  ||||||||    
T  9026786 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaat 9026885  T
Q  276 tacttttttgag-gggggaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    |||||||||||| ||| ||| ||| || | |||||||||| | || ||||   |||||| | |||  ||||||||| ||||||| ||||| |||||| ||    
T  9026886 tacttttttgagtgggagagaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgctttgcactattgcattgg-ctggcacacccctcc 9026984  T
Q  375 aattcaagtttaaattttt 393  Q
    |||||||||| ||||||||    
T  9026985 aattcaagttcaaattttt 9027003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 177 - 394
Target Start/End: Original strand, 8973312 - 8973530
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaat 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||| ||||||| |||| || |||||||||    
T  8973312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaat 8973411  T
Q  276 tacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    ||||||||| |||||| ||| ||| || | |||||||||  | || ||||   |||| |   ||| |||||||||| ||| ||  ||||||| |||||||    
T  8973412 tacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgcgttgcactattgca-tgagctggcgcgccccacc 8973510  T
Q  375 aattcaagtttaaattttta 394  Q
    |||||||||| |||||||||    
T  8973511 aattcaagttcaaattttta 8973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 177 - 393
Target Start/End: Original strand, 9008021 - 9008238
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttca-cacgatattaaat 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||| ||||||| |||  ||  ||||||||    
T  9008021 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtattaaat 9008120  T
Q  276 tacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    |||||||||||||||| ||||||| || | || |||| || | || ||||   |||||| | |||  ||||||||| ||||| | ||||| |||||||||    
T  9008121 tacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcg-ctggcacaccccacc 9008219  T
Q  375 aattcaagtttaaattttt 393  Q
    ||||| |||| || |||||    
T  9008220 aattctagttcaatttttt 9008238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 324
Target Start/End: Complemental strand, 19232504 - 19232359
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||  ||| ||| |||||| ||||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattac 19232406  T
Q  279 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 324  Q
     |||||||||||| || ||||||| | |||||||||| | |||||||    
T  19232405 ctttttgagggggagaagccacttcaatagcttgctattgggcttct 19232359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaattacttttt 10763879  T
Q  284 t 284  Q
    |    
T  10763878 t 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 9030405 - 9030512
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| ||| | ||||  |||||| ||||||  ||||||||||||||||    
T  9030405 tttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaaattacttttt 9030504  T
Q  284 tgaggggg 291  Q
    ||||||||    
T  9030505 tgaggggg 9030512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 9032053 - 9032126
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtgg 250  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9032053 tcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9023447 - 9023528
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatgg 258  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  |||| |||||||    
T  9023447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 8979322 - 8979389
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 244  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  8979322 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 8992155 - 8992262
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattactttt 282  Q
    |||||| | |||||||||||||||||||||||||| |||||||||  ||| ||||||||||  |||| ||||||| |||| |  ||||||||||||||||    
T  8992155 tttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattactttt 8992254  T
Q  283 ttgagggg 290  Q
    ||||||||    
T  8992255 ttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 8988463 - 8988568
Alignment:
Q  185 ttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttt 283  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||| ||||  |||   ||||||||| | || |||||||||||||||||    
T  8988463 ttcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttt 8988562  T
Q  284 tgaggg 289  Q
    ||||||    
T  8988563 tgaggg 8988568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 9016508 - 9016611
Alignment:
Q  192 ccttttggctaagatcaagtgtagtatctgttcttatc---ggtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgag 287  Q
    |||||||||||||||||| |||||||||||||||||||    ||||||||||||||  |||| ||||||| |||| ||  ||||||||||||||||||||    
T  9016508 ccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgag 9016607  T
Q  288 gggg 291  Q
    ||||    
T  9016608 gggg 9016611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 17225743 - 17225659
Alignment:
Q  205 atcaagtgtagtatctgttctt-atcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 288  Q
    ||||||||||||||||||| || |||||||||||| ||||||| ||| ||||||  ||| |||||||||||||||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaattacttttttgagg 17225659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 8984693 - 8984760
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgat 244  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||    
T  8984693 tcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 179 - 284
Target Start/End: Complemental strand, 6471813 - 6471709
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| ||| ||| ||||||||||||||| ||||||||||| |||||||||  ||||||||||||||||  || | ||||| ||||| |||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatatacggtctaatggatcacatgatattaagttac 6471715  T
Q  279 tttttt 284  Q
    ||||||    
T  6471714 tttttt 6471709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 35701906 - 35702003
Alignment:
Q  194 ttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    |||||||||||||||||||| |||| |||| ||||  ||||||||| |||||||||| ||||    |||||||||||||  |||||||||||||||||    
T  35701906 ttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaacaagtcacacgatattagtttacttttttgaggggg 35702003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 17275862 - 17275945
Alignment:
Q  208 aagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    |||||||||||  ||||||||| ||| ||| | | |||||||| ||||||| |||||||||||| |||||| ||||||||||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaattacatttttgaggggg 17275945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 232 - 314
Target Start/End: Original strand, 8912989 - 8913074
Alignment:
Q  232 tttaatatctgatatgtggaccaatggttcacac--gatattaaattacttttttgaggggg-gaggccacttaagtagcttgcta 314  Q
    |||||||| | |||||||| ||||||  ||||||  |||||||||||||||||||||||||| ||| ||| || ||||||||||||    
T  8912989 tttaatatataatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggagagaccatttcagtagcttgcta 8913074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 8992294 - 8992349
Alignment:
Q  337 atgtgttgcactatagcattggtctggcgcaccccaccaattcaagtttaaattttt 393  Q
    |||||||||||||| |||| || |||||||||||| |||||||||||| ||||||||    
T  8992294 atgtgttgcactattgcatggg-ctggcgcacccctccaattcaagttcaaattttt 8992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 177 - 405
Target Start/End: Complemental strand, 14669816 - 14669587
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14669816 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14669717  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  14669716 acttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgtcgccaatgtgttgcactatagcattggtctggtgcaccccacca 14669617  T
Q  376 attcaagtttaaatttttattctggttcat 405  Q
    ||||||||||||||||||||||||||||||    
T  14669616 attcaagtttaaatttttattctggttcat 14669587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 177 - 405
Target Start/End: Original strand, 14706088 - 14706317
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14706088 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14706187  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| ||||| |||| |||||||||||||||  | |||||||||| | | ||||||||||||||| |||||||||||||||||||||||    
T  14706188 acttttttgagggggagaggcaactttagtagcttgctactaatcctcttgtgtgttgactatgtgttgcactataacattggtctggcgcaccccacca 14706287  T
Q  376 attcaagtttaaatttttattctggttcat 405  Q
    ||||||||||||||||||||||||||||||    
T  14706288 attcaagtttaaatttttattctggttcat 14706317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 177 - 384
Target Start/End: Original strand, 14708578 - 14708786
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14708578 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14708677  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||| ||||| |||||||||||| |||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  14708678 acttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctggcgcaccccacca 14708777  T
Q  376 attcaagtt 384  Q
    |||||||||    
T  14708778 attcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 177 - 402
Target Start/End: Complemental strand, 14654447 - 14654222
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14654447 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14654348  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  |||| ||||||||||    
T  14654347 acttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcaccccacca 14654248  T
Q  376 attcaagtttaaatttttattctggtt 402  Q
    ||||||| |||||||||||||||||||    
T  14654247 attcaag-ttaaatttttattctggtt 14654222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 177 - 402
Target Start/End: Complemental strand, 14664238 - 14664013
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14664238 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14664139  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||||||||| ||||||||||||| || | ||| |||||||| |||| |||||||||||||||||||  |||| ||||||||||    
T  14664138 acttttttgagggggagaggccacttcagtagcttgctacgagtcctctcgtgtgtcgccaatatgttgcactatagcattggcttggctcaccccacca 14664039  T
Q  376 attcaagtttaaatttttattctggtt 402  Q
    ||||||| |||||||||||||||||||    
T  14664038 attcaag-ttaaatttttattctggtt 14664013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 177 - 405
Target Start/End: Original strand, 14683750 - 14683979
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14683750 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaatt 14683849  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| ||||| |||| |||||||||||||||| | ||| |||||||  ||||||||||||||||||||||||  ||| |||||||||||    
T  14683850 acttttttgagggggagaggcaactttagtagcttgctactagtcctctcgtgtgtcaccaatgtgttgcactatagcattggcttggtgcaccccacca 14683949  T
Q  376 attcaagtttaaatttttattctggttcat 405  Q
    || |||  ||||||||||||||||||||||    
T  14683950 atccaaagttaaatttttattctggttcat 14683979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 174 - 402
Target Start/End: Original strand, 14652522 - 14652752
Alignment:
Q  174 aaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 273  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  14652522 aaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 14652621  T
Q  274 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 372  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  ||||||||||||    
T  14652622 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcacccca 14652721  T
Q  373 ccaattcaagtttaaat-ttttattctggtt 402  Q
    |||||||||||| |||| ||||||| |||||    
T  14652722 ccaattcaagttcaaatattttattttggtt 14652752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 174 - 402
Target Start/End: Original strand, 14662313 - 14662543
Alignment:
Q  174 aaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaa 273  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  14662313 aaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 14662412  T
Q  274 attacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccca 372  Q
    |||||||||||||||||| || |||| || |||||||||||||||||||||| | ||||   ||||| ||||||||||||||||||  ||||||||||||    
T  14662413 attacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcacccca 14662512  T
Q  373 ccaattcaagtttaaat-ttttattctggtt 402  Q
    |||||||||||| |||| ||||||| |||||    
T  14662513 ccaattcaagttcaaatattttattttggtt 14662543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 177 - 385
Target Start/End: Original strand, 14716291 - 14716500
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  14716291 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaatt 14716390  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| ||||| |||| |||||||||||||||  | ||| |||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  14716391 acttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttggtgcaccccacca 14716490  T
Q  376 attcaagttt 385  Q
    ||||||||||    
T  14716491 attcaagttt 14716500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 179 - 371
Target Start/End: Original strand, 14681601 - 14681794
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14681601 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattac 14681700  T
Q  279 ttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 371  Q
    ||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14681701 ttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14681794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 177 - 371
Target Start/End: Original strand, 14674481 - 14674676
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  14674481 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatt 14674580  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcacccc 371  Q
    ||||||||||||||| || |||| || |||||||||||||||||||||| | |||||  |||||| |||||||||||||||||| |||| ||||||    
T  14674581 acttttttgagggggagaagccattttagtagcttgctactaggcttctcgggtgtcaacaatgtattgcactatagcattggtttggcacacccc 14674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 177 - 402
Target Start/End: Original strand, 14679859 - 14680085
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  14679859 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaatt 14679958  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| || ||||  | |||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||||  |||||||||| ||||    
T  14679959 acttttttgagggggagaagccatattagtagcttgctactaggcttcttgagtgttgccaatgcgttgcactacagcattggcttggcgcacccgacca 14680058  T
Q  376 attcaagtttaaatttttattctggtt 402  Q
    ||   ||| ||||||||| || |||||    
T  14680059 atctgagtctaaattttttttttggtt 14680085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 177 - 393
Target Start/End: Complemental strand, 38175637 - 38175420
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  38175637 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaatt 38175538  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| ||  |||| | ||||||||||| || || || |  |||||||   ||||||||||||||  |||  | ||||||||||||||||    
T  38175537 acttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcaccccacca 38175438  T
Q  376 attcaagtttaaattttt 393  Q
    |||| |||| || |||||    
T  38175437 attctagttcaatttttt 38175420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 177 - 385
Target Start/End: Complemental strand, 28366306 - 28366097
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg-gaccaatggttcacacgatattaaat 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||| ||||||||||||||||    
T  28366306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaat 28366207  T
Q  276 tacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    ||||||||| |||||| ||| | | |  |||||||||||||||||  | |  ||||||||  ||| |||||||||| ||||||| |||||||| ||||||    
T  28366206 tacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattgg-ctggcgcatcccacc 28366108  T
Q  375 aattcaagttt 385  Q
    |||| ||||||    
T  28366107 aattaaagttt 28366097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 393
Target Start/End: Complemental strand, 14667218 - 14667007
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| |||||||||||    
T  14667218 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaatt 14667119  T
Q  277 acttttttgaggggg-gaggcca-cttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    |||||||  |||||| || ||||  || |||||       | |||||||| | |||| | || |||||||||||||||||||||  ||||||||||||||    
T  14667118 actttttctagggggagaagccatttttagtag-------caaggcttctcgagtgttgccagtgtgttgcactatagcattggcttggcgcaccccacc 14667026  T
Q  375 aattcaagtttaaattttt 393  Q
    ||| |||| | ||||||||    
T  14667025 aatccaagctcaaattttt 14667007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 33988070 - 33988208
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||  |||||||||||||||||    
T  33988070 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaatt 33988169  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgcta 314  Q
    |||||||| |||||| ||||||| || | ||||||||||    
T  33988170 acttttttaagggggagaggccatttcaatagcttgcta 33988208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 177 - 272
Target Start/End: Original strand, 14676632 - 14676727
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatta 272  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14676632 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 11872581 - 11872471
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  11872581 tttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattacttttt 11872482  T
Q  284 tgaggggggag 294  Q
    | | |||||||    
T  11872481 ttaagggggag 11872471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 37422176 - 37422247
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaa 255  Q
    |||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||| ||||    
T  37422176 tttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 177 - 249
Target Start/End: Original strand, 28698553 - 28698625
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtg 249  Q
    ||||||||||||||| ||||||||||||||||| |||||||| | || |||||  |||||||| |||||||||    
T  28698553 tcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 14703134 - 14703193
Alignment:
Q  231 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg 290  Q
    ||||||||| |||||||||||||||| || |||||||||||||||||  ||||| |||||    
T  14703134 gtttaatatttgatatgtggaccaatagtccacacgatattaaattaaattttttagggg 14703193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 177 - 378
Target Start/End: Complemental strand, 11652499 - 11652298
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  11652499 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaatt 11652400  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    | ||||||||||||| || ||||||  | |||||||||| | ||||||||| |||||| | |||||||||||||| ||| ||| ||||||||||||||||    
T  11652399 atttttttgagggggagaagccactccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgca-tgggctggcgcaccccacca 11652301  T
Q  376 att 378  Q
    |||    
T  11652300 att 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 177 - 384
Target Start/End: Complemental strand, 49106636 - 49106428
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||    
T  49106636 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaatt 49106537  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| || | ||| | |||||||||||||| |  ||||| |||||||   |||||||||||||| ||||  |   ||||||||||||||    
T  49106536 acttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcaccccacca 49106437  T
Q  376 attcaagtt 384  Q
    |||| ||||    
T  49106436 attctagtt 49106428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 177 - 384
Target Start/End: Complemental strand, 3461249 - 3461042
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||||||||||    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 3461150  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||||| |||||| || |||| || | |||||||||| | || |||| | |||||||| ||| |||||||||| |||| || ||||| ||||||||||    
T  3461149 acttttttaagggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcatagg-ctggcacaccccacca 3461051  T
Q  376 attcaagtt 384  Q
    || ||||||    
T  3461050 atacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 50077306 - 50077158
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||    
T  50077306 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaatt 50077207  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttct 324  Q
    ||||||||||||||| || ||||||| | |||||||||| | |||||||    
T  50077206 acttttttgagggggagaagccacttcaatagcttgctattgggcttct 50077158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 177 - 392
Target Start/End: Complemental strand, 49108740 - 49108524
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||| |||||||||||||||||    
T  49108740 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 49108641  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| || | ||    |||||||||||| | | |||||| |||||||   |||||||||||||| ||||  |   ||||||||||||||    
T  49108640 acttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgcaccccacca 49108541  T
Q  376 attcaagtttaaatttt 392  Q
    || | ||||||| ||||    
T  49108540 atcctagtttaattttt 49108524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 178 - 289
Target Start/End: Complemental strand, 26998846 - 26998735
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26998747  T
Q  278 cttttttgaggg 289  Q
    ||||||| ||||    
T  26998746 ctttttttaggg 26998735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 26984773 - 26984668
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 277  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatta 26984674  T
Q  278 cttttt 283  Q
    ||||||    
T  26984673 cttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 178 - 289
Target Start/End: Original strand, 48205832 - 48205943
Alignment:
Q  178 catacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatta 277  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||   |||||||||| |||||||||||| ||||| ||| ||||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatta 48205931  T
Q  278 cttttttgaggg 289  Q
    ||||||||||||    
T  48205932 cttttttgaggg 48205943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 205 - 291
Target Start/End: Original strand, 21503706 - 21503792
Alignment:
Q  205 atcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||| | |||||||||||||||||| |||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgaggggg 21503792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 41013651 - 41013548
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||     
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaattat 41013552  T
Q  279 tttt 282  Q
    ||||    
T  41013551 tttt 41013548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 26982549 - 26982646
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    ||||||||||| |||||||||||||||||||| ||||||| |||   ||||| ||||| ||||||||| ||||| || ||| |||||||||| | |||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgttatta---gtttagtatctaatatgtggatcaatgatttacatgatattaaatcatttttt 26982645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 35806165 - 35806238
Alignment:
Q  213 tagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttga 286  Q
    |||||| |||||||||| ||||||||| ||||||||   | ||||  || ||||||||||||||||||||||||    
T  35806165 tagtatttgttcttatcagtttaatatatgatatgtaatctaatgagtcgcacgatattaaattacttttttga 35806238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 284
Target Start/End: Original strand, 54677590 - 54677633
Alignment:
Q  241 tgatatgtggaccaatggttcacacgatattaaattactttttt 284  Q
    |||||||||| | ||||| |||||||||||||||||||||||||    
T  54677590 tgatatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 34481155 - 34481105
Alignment:
Q  234 taatatctgatatgtggaccaatggttcacacgatattaaattactttttt 284  Q
    |||||||||||||||| | ||||| | |||| |||||||||||||||||||    
T  34481155 taatatctgatatgtgaatcaatgatccacaagatattaaattactttttt 34481105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaat 237  Q
    ||||||||||| ||||||||||||| || |||||||| |||||||  |||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 177 - 393
Target Start/End: Original strand, 7524968 - 7525185
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatt 7525067  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| |||||| | | ||||||||||| || || ||||  ||||||||| ||| |||||||||| |||| ||   ||||||||||||||    
T  7525068 acttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcaccccacca 7525167  T
Q  376 attcaagtttaaattttt 393  Q
    |||  ||||||| |||||    
T  7525168 attttagtttaatttttt 7525185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 380
Target Start/End: Original strand, 3643640 - 3643843
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||    
T  3643640 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    |||||||| |||||| ||  | |    | |||||||||| | || |||| | |||| |   |||||||||||||| ||||||| ||||||||||||||||    
T  3643740 acttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgttgcttatgtgttgcactattgcattgg-ctggcgcaccccacca 3643838  T
Q  376 attca 380  Q
    |||||    
T  3643839 attca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 177 - 291
Target Start/End: Complemental strand, 1716559 - 1716444
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggacc-aatggttcacacgatattaaat 275  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||    
T  1716559 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaat 1716460  T
Q  276 tacttttttgaggggg 291  Q
    ||||||||| ||||||    
T  1716459 tacttttttaaggggg 1716444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 4103252 - 4103357
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    |||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||| ||||||    
T  4103252 tttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgcttttt 4103351  T
Q  284 tgaggg 289  Q
    | ||||    
T  4103352 ttaggg 4103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 5350672 - 5350777
Alignment:
Q  210 gtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggg-ggaggccacttaagtagc 308  Q
    ||||||||||| || ||||| ||||||||||||||||||||  ||||||| ||||||||||||||||  ||| ||||||||  ||| ||||  |||||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  309 ttgcta 314  Q
    ||||||    
T  5350772 ttgcta 5350777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 286
Target Start/End: Original strand, 16037861 - 16037966
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattac 278  Q
    |||| |||||||||| |||  ||||||||||||||||||| |||||||||    ||||||| ||||| |||| | ||||| ||| |||||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaattac 16037958  T
Q  279 ttttttga 286  Q
    ||||||||    
T  16037959 ttttttga 16037966  T

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Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 19261217 - 19261152
Alignment:
Q  183 atttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgt 248  Q
    ||||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261217 atttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 13636366 - 13636426
Alignment:
Q  231 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    ||||||||||||||||||||| ||| ||| |||||| ||||||||||  || |||||||||    
T  13636366 gtttaatatctgatatgtggatcaacggtccacacggtattaaattaagttcttgaggggg 13636426  T

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Target: chr6 (Bit Score: 106; Significance: 6e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 177 - 333
Target Start/End: Complemental strand, 10795997 - 10795840
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||    
T  10795997 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaatt 10795898  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcg 333  Q
    ||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    
T  10795897 acttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcg 10795840  T

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Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 177 - 392
Target Start/End: Complemental strand, 10791759 - 10791543
Alignment:
Q  177 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaatt 276  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| ||||| |||||||||||    
T  10791759 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaatt 10791660  T
Q  277 acttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccacca 375  Q
    ||||||||||||||| || ||||||| | |||||||||| |||||||||  |||||||    || |||||||||| ||||  ||  ||  ||||||||||    
T  10791659 acttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggtacaccccacca 10791560  T
Q  376 attcaagtttaaatttt 392  Q
    |||| ||||||| ||||    
T  10791559 attctagtttaactttt 10791543  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 30521237 - 30521440
Alignment:
Q  172 acaaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatatt 271  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||  |  ||||||||||||    
T  30521237 acaaatcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatatt 30521336  T
Q  272 aaattacttttttgaggggg-gaggccacttaagtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccc 370  Q
     ||||  ||||||||||||| ||| |||||    |||||||||| | ||  |||   ||||||||  ||  ||||||||| ||||||| |||||||||||    
T  30521337 caatttattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcattggcctggcgcaccc 30521436  T
Q  371 cacc 374  Q
    ||||    
T  30521437 cacc 30521440  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 374
Target Start/End: Original strand, 13136608 - 13136752
Alignment:
Q  231 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggggag-gccacttaagtagcttgctactaggcttcttgtgt 329  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||  | |||| |  ||||||||||||||  ||||||  |||    
T  13136608 gtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagagggaggagccattgcagtagcttgctactctgcttctcttgt 13136707  T
Q  330 gtcgtcaatgtgttgcactatagcattggtctggcgcaccccacc 374  Q
    ||||  |||| |||||||||||||||| || ||||||||||||||    
T  13136708 gtcgctaatgcgttgcactatagcattagtttggcgcaccccacc 13136752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 8875691 - 8875803
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaat--t 276  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||| ||||| | | ||||||||||||||  |    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaattat 8875790  T
Q  277 acttttttgaggg 289  Q
    |||||||||||||    
T  8875791 acttttttgaggg 8875803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 11333273 - 11333344
Alignment:
Q  220 tgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgaggggg 291  Q
    |||||||||| |||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgaggggg 11333344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 10509478 - 10509551
Alignment:
Q  303 agtagcttgctactaggcttcttgtgtgtcgtcaatgtgttgcactatagcattggtctggcgcaccccaccaa 376  Q
    |||||||||||||| ||||||||||||||||  |||| ||||||||||||||||||  ||| ||||||||||||    
T  10509478 agtagcttgctactcggcttcttgtgtgtcgctaatgcgttgcactatagcattggcttggagcaccccaccaa 10509551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 283
Target Start/End: Original strand, 21216031 - 21216131
Alignment:
Q  183 atttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattactttt 282  Q
    |||||| || |||||| ||||||||| || ||| |||| |||||||| ||||||||||| ||||||||  |||||  |||||  ||||||||||||||||    
T  21216031 atttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaaaatattaaattactttt 21216130  T
Q  283 t 283  Q
    |    
T  21216131 t 21216131  T

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Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 27134505 - 27134625
Alignment:
Q  171 cacaaatcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatat 270  Q
    |||| ||||||| ||| ||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||| | ||||  ||| |||||||    
T  27134505 cacacatcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatat 27134604  T
Q  271 taaattacttttttgaggggg 291  Q
    |||||||||||||||||||||    
T  27134605 taaattacttttttgaggggg 27134625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 184 - 291
Target Start/End: Original strand, 8128150 - 8128256
Alignment:
Q  184 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcggtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttt 283  Q
    |||||||  ||||||| |||||| ||||||||||| ||||||| |  ||||||||| |||||||||| ||||||| |||||| ||||||||||  ||| |    
T  8128150 tttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttct 8128248  T
Q  284 tgaggggg 291  Q
    ||||||||    
T  8128249 tgaggggg 8128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 5450 - 5507
Alignment:
Q  231 gtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagg 288  Q
    |||||||||||||||| ||| ||||| |||||||||||||||||||  ||||||||||    
T  5450 gtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgagg 5507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  179 atacatttctcggccttttggctaagatcaagtgtagtatctgttct 225  Q
    |||| |||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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