View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1782_low_8 (Length: 327)
Name: NF1782_low_8
Description: NF1782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1782_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 290
Target Start/End: Complemental strand, 30731445 - 30731178
Alignment:
| Q |
23 |
gtcaatggcatcctatcatatacaacacaatttggagaaacactctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttaggga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731445 |
gtcaatggcatcctatcatatacaacacaatttggagaaacactctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttaggga |
30731346 |
T |
|
| Q |
123 |
tttcctacttctgcttcgactttagacaaattcactaatatcccatctctatcagtaatcacatatctcaagaattgaaattcactaaaacatgttataa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
30731345 |
tttcctacttctgcttcgactttagacaaattcactaatatcccatctctatcagtaatcacatatctcaataattgaaattcactaaaacatattataa |
30731246 |
T |
|
| Q |
223 |
atatatttactcgaaaaacttttagaaaactatgctttgttgaattaagaaactatattgactctaaa |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30731245 |
atatatttactcgaaaaacttttagaaaactatgctttgttgaattaagaaactatattgactctaaa |
30731178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 14670378 - 14670644
Alignment:
| Q |
23 |
gtcaatggcatcctatcatatacaacacaatttggagaaacactctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttaggga |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14670378 |
gtcaatggcatcctatcatatacaacacaatttggagaaacaatctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttaggga |
14670477 |
T |
|
| Q |
123 |
tttcctacttctgcttcgactttagacaaattcactaatatcccatctctatcagtaatcacatatctcaagaattgaaattcactaaaacatgttataa |
222 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14670478 |
tttcctacttctacttcgactttagacaaattcactaatatcccatctctatcagtaatcacatatctcaagaattgaaattcactaaaacatattataa |
14670577 |
T |
|
| Q |
223 |
atatatttactcgaaaaacttttagaaaactatgctttgttgaattaagaaactatattgactctaa |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14670578 |
atatatttactcgaaaaacttttagaaaactatgctttgttgaattaagaaactatattgactctaa |
14670644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 64 - 290
Target Start/End: Complemental strand, 14705584 - 14705361
Alignment:
| Q |
64 |
actctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttagggatttcctacttctgcttcgactttagacaaattcactaatat |
163 |
Q |
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||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14705584 |
actctgataatctcccgccaaactaaggaaa-tacat--cccacctaatgtcttagggatttcctacttctgcttccactttagacaaattcactaatat |
14705488 |
T |
|
| Q |
164 |
cccatctctatcagtaatcacatatctcaagaattgaaattcactaaaacatgttataaatatatttactcgaaaaacttttagaaaactatgctttgtt |
263 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
14705487 |
cccatctctatcagtaatcacatacctcaagaattgaaattcactaaaacatattataaatagatttactcaaaaaacttttagaaaactatgctttgtt |
14705388 |
T |
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| Q |
264 |
gaattaagaaactatattgactctaaa |
290 |
Q |
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||||||||||||||||||||||||||| |
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| T |
14705387 |
gaattaagaaactatattgactctaaa |
14705361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 65 - 288
Target Start/End: Complemental strand, 14685883 - 14685674
Alignment:
| Q |
65 |
ctctgataatctcccgccaaactaaggaaactaaataacccacctaatgtcttagggatttcctacttctgcttcgactttagacaaattcactaatatc |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14685883 |
ctctgataatctcccgccaaactaaggaaactaaataacccaacaaatgtcttagggatttcctacttctgctttgactttagacaaattca-------- |
14685792 |
T |
|
| Q |
165 |
ccatctctatcagtaatcacatatctcaagaattgaaattcactaaaacatgttataaatatatttactcgaaaaacttttagaaaactatgctttgttg |
264 |
Q |
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| |||||||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||| ||||||| |
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| T |
14685791 |
------ccatcagtaatcacatgtcccaagaattgaaattcactaaaacatattataaatagatttacttgaattttttttagaaaactatggtttgttg |
14685698 |
T |
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| Q |
265 |
aattaagaaactatattgactcta |
288 |
Q |
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||||||||||||| |||||||||| |
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| T |
14685697 |
aattaagaaactacattgactcta |
14685674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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