View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17830_low_1 (Length: 614)
Name: NF17830_low_1
Description: NF17830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17830_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 8 - 599
Target Start/End: Complemental strand, 37037271 - 37036684
Alignment:
| Q |
8 |
tgtcgaagaatatgataccaaatatcgtttctctttttaagaatgtcaaactttttcattaccaatgcacgattagactaactttctagatactaagtta |
107 |
Q |
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| T |
37037271 |
tgtcgaaaaatatgatac-aaatatcgtttctctttttaaaaatgtcaaactttttcattaccaatgcacgattagactaactttcaagatactagttta |
37037173 |
T |
|
| Q |
108 |
acatttcccattaaaatataatcttatcctataattaagatagtagtagcatatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37037172 |
acatttcccattaaaatataatcttaccctataattaagatagtag---catatatagcagtagcacacttctctgttctccaaagaatctcaaatataa |
37037076 |
T |
|
| Q |
208 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
307 |
Q |
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| T |
37037075 |
taatcttgctcttattcttctttgctttctaccatttgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttc |
37036976 |
T |
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| Q |
308 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37036975 |
aaagagcaatagacctcttgattctactccttttattttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacaattccatggtt |
37036876 |
T |
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| Q |
408 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
507 |
Q |
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| T |
37036875 |
tcttgcattctcatgtgaatcttggttcacatatacttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctc |
37036776 |
T |
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| Q |
508 |
cttcaacggtatgtaatataaactctcgtgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaattgatgcaact |
599 |
Q |
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| T |
37036775 |
cttcaacggtatgcaatataaactctcgcgtcacgatatttgatattcttataagttactgtctttactgtgtgtatgtaatcgatgcaact |
37036684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 244 - 561
Target Start/End: Complemental strand, 37046729 - 37046427
Alignment:
| Q |
244 |
tgcagaatggtcaaccaagaaaatctccttctttacgaaaaaatatggattaaacgcacacttcaaagagcaatagacctcttgattctactccttttat |
343 |
Q |
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|||||||||| |||||||||||||||| ||| || |||||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||| ||| |
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| T |
37046729 |
tgcagaatggcaaaccaagaaaatctccctctgtatgaaaaaatatggatcaaacgaacatttcaaagagcaatagatatcttgattttactcctcctat |
37046630 |
T |
|
| Q |
344 |
tttctcttctttgttaccgtattttcttcatcatcagcaacaaaaccttcacacttccatggtttcttgcattctcatgtgaatcttggttcacatatac |
443 |
Q |
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| T |
37046629 |
tctctcttctttgttaccgtat---------------caacgtcaccttcacaattccatggtttcttgcattctcatgtgaatcttggttcacatatac |
37046545 |
T |
|
| Q |
444 |
ttggattattcttctcaacaccaaatggagtcctgctgttaccaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgtgtcacga |
543 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37046544 |
ttggattattcttctcaacaccaaatggagtcctgctgttaacaaaacatatccaaaccgtctccttcaacggtatgtaatataaactctcgcgtcacga |
37046445 |
T |
|
| Q |
544 |
tatttgatattcttataa |
561 |
Q |
| |
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||||||||||| |||||| |
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| T |
37046444 |
tatttgatattattataa |
37046427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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