View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17830_low_12 (Length: 254)
Name: NF17830_low_12
Description: NF17830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17830_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29339766 - 29340004
Alignment:
| Q |
1 |
ttctcatctcgtgctacttgtctacaccattctatggtatggaagcttgatcgtttttatgtttctaagagacaatggtttattactattggtggtgttg |
100 |
Q |
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| T |
29339766 |
ttctcatctcgtgctacttgtctacaccattccatggtgtggaagcttgatcgttttaatgtatctaagagacaatggtttattactattggtggtgttg |
29339865 |
T |
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| Q |
101 |
ctggaaatccgggatgggaaaccattaataattggtttaagattgagaaatatggtgatgcttataagttggtgttttgccctagtgtggtgcagtcttt |
200 |
Q |
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| T |
29339866 |
ctggaaatccgggatgggaaaccattaataattggttcaagattgagaagtatggtgatgcttataagttggtgttttgccctagtgtggtgcagtcttt |
29339965 |
T |
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| Q |
201 |
caagcatatgtgtaaggatgttggagtatttgttgatga |
239 |
Q |
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| T |
29339966 |
caagcatatgtgtaaggatgttggagtatttgttgatga |
29340004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29343153 - 29342915
Alignment:
| Q |
1 |
ttctcatctcgtgctacttgtctacaccattctatggtatggaagcttgatcgtttttatgtttctaagagacaatggtttattactattggtggtgttg |
100 |
Q |
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| T |
29343153 |
ttctcatctcgtgctacttgtctacaccattccatggtgtggaagcttgatcgttttaatgtatctaagagacaatggtttattactattggtggtgttg |
29343054 |
T |
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| Q |
101 |
ctggaaatccgggatgggaaaccattaataattggtttaagattgagaaatatggtgatgcttataagttggtgttttgccctagtgtggtgcagtcttt |
200 |
Q |
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| T |
29343053 |
ctggaaatccgggatgggaaaccattaataattggttcaagattgagaagtatggtgatgcttataagttggtgttttgccctagtgtggtgcagtcttt |
29342954 |
T |
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| Q |
201 |
caagcatatgtgtaaggatgttggagtatttgttgatga |
239 |
Q |
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| T |
29342953 |
caagcatatgtgtaaggatgttggagtatttgttgatga |
29342915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 29378806 - 29378863
Alignment:
| Q |
132 |
ttggtttaagattgagaaatatggtgatgcttataagttggtgttttgccctagtgtg |
189 |
Q |
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|||||| ||||||||||| |||| ||||||||||||||||| | |||||||| |||| |
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| T |
29378806 |
ttggttcaagattgagaagtatgaagatgcttataagttggtctattgccctaatgtg |
29378863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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