View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17830_low_2 (Length: 612)
Name: NF17830_low_2
Description: NF17830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17830_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 28850296 - 28850169
Alignment:
| Q |
12 |
acttctgaatctcatgaagatacgatttaggaataacacaactcatcatcggataaataggaactgcttcaataaatgatttagcaaaagtcactctacc |
111 |
Q |
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| T |
28850296 |
acttctgaatctcataaagacacgatttaggaataacacaactcatcatcggataaataaaaactgcttcaataactgatttagcaagagtcactcaacc |
28850197 |
T |
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| Q |
112 |
agcaaaggaaagatgttttgctttccat |
139 |
Q |
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| T |
28850196 |
gacaaaggaaagatgttttgctatccat |
28850169 |
T |
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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 421 - 591
Target Start/End: Original strand, 22824368 - 22824538
Alignment:
| Q |
421 |
atcatctgcaaacatcaaatgagacacaattggtccatttctacctgctttcatggcaatccactccccgttattcactttctcacaaataagatgagat |
520 |
Q |
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| T |
22824368 |
atcatcagcaaacatcaaatgagaaatcattggacctgttctaccagctttcaaagccaaccaatcacctctatcgactgcctcactaataagatgggac |
22824467 |
T |
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| Q |
521 |
agtttatccatacatataacaaaaagataaggtgaaataggatcaccttgcctcaagcctttcttgggaga |
591 |
Q |
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| T |
22824468 |
aatttatccatgcatataacaaatagataaggtgaaataggatcaccttgcttcaaacctttcttaggaga |
22824538 |
T |
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Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 502 - 590
Target Start/End: Original strand, 16858788 - 16858876
Alignment:
| Q |
502 |
ctcacaaataagatgagatagtttatccatacatataacaaaaagataaggtgaaataggatcaccttgcctcaagcctttcttgggag |
590 |
Q |
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| T |
16858788 |
ctcactaataagatgggacaatttatccatgcatataacgaatagataaggtgaaataggatcaccttgcctcaaacctttcttaggag |
16858876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 573
Target Start/End: Original strand, 54814285 - 54814335
Alignment:
| Q |
523 |
tttatccatacatataacaaaaagataaggtgaaataggatcaccttgcct |
573 |
Q |
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| T |
54814285 |
tttatccatacaaataacaaaaagataaggggaaagagggtccccttgcct |
54814335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 21311110 - 21311199
Alignment:
| Q |
91 |
tttagcaaaagtcactctaccagcaaaggaaagatgttttgctttccatgacaccagtttatttctcacttgatcaataatatactgaaa |
180 |
Q |
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| T |
21311110 |
tttagccaaagtaactctccctggaaaggaaagttgtttagctttccaggccataagcttattgctgacttgatcaacaatatactgaaa |
21311199 |
T |
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