View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17830_low_5 (Length: 367)
Name: NF17830_low_5
Description: NF17830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17830_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 50361154 - 50361494
Alignment:
| Q |
13 |
actgaaaatttgtgaaagaaaaatcttgtgcgtgtagtaaaagttaaatgatttgaacgaaacgaaagttaaataacttctttnnnnnnnttaagataaa |
112 |
Q |
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| T |
50361154 |
actgaaaatttgtgaaagaaaaatcttgtgcatgtagtaaaagttaaatgatttgaacgaaacgaaagttaaataacttctttaaaaaaattaagataaa |
50361253 |
T |
|
| Q |
113 |
tgactaaattaatacaaaataataggatagattgagtacgcgagggttttgccgctatagttaaagtgttgttaataggtattgatacaagcgcgtaggt |
212 |
Q |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
50361254 |
tgaccaaattaatacaaaataataggataaattgagtacgcgagggttttgccgctatagttaaagtgttgttaataggtatagatacaagcgtgtaggt |
50361353 |
T |
|
| Q |
213 |
gctcatattgtacgggtacgagtattaaagttgttatccatgaaaacacaagtacggttannnnnnnnaatctatgggtacgagaacgagcactttagta |
312 |
Q |
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|| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
50361354 |
acttatattgtacgggtatgagtattaaagttgctatccataaaaacacaagtacgggtattttttttaatctatgggtacgagaacgagcactttagta |
50361453 |
T |
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| Q |
313 |
ccctattcataccctatccattgttatccctagctagtacc |
353 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
50361454 |
ccctacacataccctatccattgttatccctagctagtacc |
50361494 |
T |
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