View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17830_low_8 (Length: 304)
Name: NF17830_low_8
Description: NF17830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17830_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 47319639 - 47319926
Alignment:
| Q |
12 |
aagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47319639 |
aagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttga |
47319738 |
T |
|
| Q |
112 |
aagaacatcaa-------------gattcaacatcttcttgccaccaggagatgaaatcccacttctattcccaacgtcgtttgcaacagcagttaaagt |
198 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47319739 |
aagaacatcaagatttaatttcaagattcaacatcttcttgccaccaggagatgaaatcccacttctattcccaacgtcgtttgcaacagcagttaaagt |
47319838 |
T |
|
| Q |
199 |
tgcatttccagataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttc |
286 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47319839 |
tgcatttccatataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttc |
47319926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 47316129 - 47316243
Alignment:
| Q |
12 |
aagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttga |
111 |
Q |
| |
|
|||| ||||| || ||| || ||| ||||||||||||| |||||| | |||||||||||||||||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
47316129 |
aagagggaaatgtatgaagaattcgtgaaactcctacaagatttcggcgccaaaagaattgatagaagagtcgtcaaagaaggagttacggagttgttga |
47316228 |
T |
|
| Q |
112 |
aagaacatcaagatt |
126 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47316229 |
aagaacatcaagatt |
47316243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 47314399 - 47314504
Alignment:
| Q |
21 |
aagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttgaaagaacatc |
120 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
47314399 |
aagtttgacgagttcatgaaactcctacatgattttggtgccaaaagaattgataaaagagttgtcaaagaaggagttatggagttgtttaaagagcatc |
47314498 |
T |
|
| Q |
121 |
aagatt |
126 |
Q |
| |
|
|||||| |
|
|
| T |
47314499 |
aagatt |
47314504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 47314599 - 47314700
Alignment:
| Q |
175 |
gtcgtttgcaacagcagttaaagttgcatttccagataagatggaaaagtatgatg--aattcttgaaactcgtagttgattacaatgccaaaagaattg |
272 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| | |||||| ||||||||||| || ||||| |||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
47314599 |
gtcgcttgtaacagcggttaaagttgcatttcaaaataagagggaaaagtatggtgaaaattcctgaaactcctagttaattaccatgccaaaagaattg |
47314698 |
T |
|
| Q |
273 |
at |
274 |
Q |
| |
|
|| |
|
|
| T |
47314699 |
at |
47314700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 184 - 283
Target Start/End: Original strand, 47316359 - 47316458
Alignment:
| Q |
184 |
aacagcagttaaagttgcatttccagataagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagtt |
283 |
Q |
| |
|
||||| |||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||| | ||||||||||||||| | |||||| |
|
|
| T |
47316359 |
aacagaagttaaggttacatttgaagataagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagtt |
47316458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 47319852 - 47319966
Alignment:
| Q |
12 |
aagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttga |
111 |
Q |
| |
|
|||| |||||||| |||||| ||| |||||||| || ||||| || |||||||||||||||| ||||| ||||||||||| | ||||||||||| | |
|
|
| T |
47319852 |
aagatggaaaagtatgatgaattcttgaaactcgtagttgattacaatgccaaaagaattgatatgagagttttcaaagaaggactgatggagttgttta |
47319951 |
T |
|
| Q |
112 |
aagaacatcaagatt |
126 |
Q |
| |
|
|||| ||| |||||| |
|
|
| T |
47319952 |
aagaccataaagatt |
47319966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 47316251 - 47316294
Alignment:
| Q |
121 |
aagattcaacatcttcttgccaccaggagatgaaatcccacttc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
47316251 |
aagattcaacatcttcttgccaccaggacatgaaatctcacttc |
47316294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 47316387 - 47316490
Alignment:
| Q |
12 |
aagaaggaaaagtttgatgatttcatgaaactcctacatgatttcagggccaaaagaattgatagaagagtcatcaaagaaggaattatggagttgttga |
111 |
Q |
| |
|
|||| ||||||||| |||| ||| ||||||||||| ||||| | ||||||||||||||| |||||| ||||||||||||| ||||||||||| | |
|
|
| T |
47316387 |
aagatggaaaagttcaatgaattcttgaaactcctagctgattaccaagccaaaagaattgatgtaagagttgtcaaagaaggaatgatggagttgttta |
47316486 |
T |
|
| Q |
112 |
aaga |
115 |
Q |
| |
|
|||| |
|
|
| T |
47316487 |
aaga |
47316490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 47307091 - 47307136
Alignment:
| Q |
119 |
tcaagattcaacatcttcttgccaccaggagatgaaatcccacttc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
47307091 |
tcaagattcaacatcttcttgccaccaggacaagaaatctcacttc |
47307136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 47311166 - 47311211
Alignment:
| Q |
119 |
tcaagattcaacatcttcttgccaccaggagatgaaatcccacttc |
164 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||| |||||| |
|
|
| T |
47311166 |
tcaagattcaacatcttcatgccatcaggacatgaaatctcacttc |
47311211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University