View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_high_11 (Length: 359)
Name: NF17831_high_11
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 359
Target Start/End: Complemental strand, 38847945 - 38847601
Alignment:
| Q |
15 |
ctctctgtttcaatgggtatgtgttcattctactctttttctctctatatcaccttttaatcgtttattaattaatgtctcttttatttgttgatcagca |
114 |
Q |
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| T |
38847945 |
ctctctgtttcaatgggtatgtgttcattctactctttttctctctatatcaccttttaatcgtttattaattaatgtctcttttatttgttgatcagca |
38847846 |
T |
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| Q |
115 |
tctgacaagaagatcaggatcggaatcaacggtaattcaattcttactactttcattacggtgtttgttttatcttaattaattttacttaattaaatta |
214 |
Q |
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| T |
38847845 |
tctgacaagaagatcaggatcggaatcaacggtaattcaattcttactactttcattacgttgtttgttttatcttaattaattttacttaattaaatta |
38847746 |
T |
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| Q |
215 |
tttctttctgtaaacaggatttggaagaattggacgattggttgctagagttgctcttcaaagaaacgatgttgaactcgttgctatctacgatcctttc |
314 |
Q |
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| T |
38847745 |
tttctttctgtaaacaggatttggaagaattggacgattggttgctagagttgctcttcaaagaaacgatgttgaactcgttgctatcaacgatcctttc |
38847646 |
T |
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| Q |
315 |
atcactactgattacatggtaaaatctctgatacgattacaattt |
359 |
Q |
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| T |
38847645 |
atcactactgattacatggtaaaatctctgatccgattacaattt |
38847601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 335
Target Start/End: Complemental strand, 42992915 - 42992810
Alignment:
| Q |
230 |
aggatttggaagaattggacgattggttgctagagttgctcttcaaagaaacgatgttgaactcgttgctatctacgatcctttcatcactactgattac |
329 |
Q |
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| T |
42992915 |
aggatttggaagaatcggacgtttggttgctagagttgctttgaagagagatgatgttgaactcgttgctgttaacgatcctttcatcaccactgattac |
42992816 |
T |
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| Q |
330 |
atggta |
335 |
Q |
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| T |
42992815 |
atggta |
42992810 |
T |
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