View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17831_high_15 (Length: 271)

Name: NF17831_high_15
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17831_high_15
NF17831_high_15
[»] chr5 (13 HSPs)
chr5 (32-124)||(1866936-1867027)
chr5 (34-93)||(22874285-22874344)
chr5 (45-100)||(25650507-25650562)
chr5 (1-35)||(27366484-27366518)
chr5 (46-101)||(33741640-33741696)
chr5 (48-120)||(38869913-38869983)
chr5 (1-33)||(40365542-40365574)
chr5 (1-34)||(5070777-5070810)
chr5 (1-34)||(9248926-9248959)
chr5 (1-34)||(25538037-25538070)
chr5 (1-33)||(7458575-7458607)
chr5 (1-33)||(18048568-18048600)
chr5 (1-33)||(39932810-39932842)
[»] chr1 (26 HSPs)
chr1 (34-119)||(19234862-19234946)
chr1 (46-120)||(43457927-43458000)
chr1 (32-101)||(9424592-9424661)
chr1 (32-101)||(26758542-26758611)
chr1 (32-128)||(37633641-37633736)
chr1 (46-101)||(42489211-42489266)
chr1 (45-86)||(51690133-51690174)
chr1 (46-101)||(26265006-26265061)
chr1 (46-109)||(49497065-49497128)
chr1 (1-35)||(51417617-51417651)
chr1 (1-34)||(3163173-3163206)
chr1 (1-34)||(12959547-12959580)
chr1 (1-34)||(15170316-15170349)
chr1 (1-34)||(17180669-17180702)
chr1 (1-34)||(34022423-34022456)
chr1 (7-40)||(34967587-34967620)
chr1 (6-35)||(39501679-39501708)
chr1 (1-34)||(52703368-52703401)
chr1 (1-33)||(290522-290554)
chr1 (1-33)||(2733840-2733872)
chr1 (1-33)||(7572556-7572588)
chr1 (1-33)||(13387524-13387556)
chr1 (1-33)||(16051899-16051931)
chr1 (8-40)||(32145613-32145645)
chr1 (1-33)||(46398597-46398629)
chr1 (1-33)||(46436533-46436565)
[»] chr3 (22 HSPs)
chr3 (46-120)||(4228817-4228890)
chr3 (45-120)||(54261814-54261888)
chr3 (46-109)||(37662996-37663059)
chr3 (46-87)||(44543045-44543086)
chr3 (45-92)||(44544752-44544799)
chr3 (32-101)||(4239104-4239178)
chr3 (46-87)||(31197808-31197850)
chr3 (34-119)||(53200893-53200977)
chr3 (30-101)||(16277637-16277708)
chr3 (1-36)||(22926032-22926067)
chr3 (1-32)||(23513143-23513174)
chr3 (46-120)||(11364802-11364874)
chr3 (1-35)||(23307773-23307807)
chr3 (1-35)||(40501125-40501159)
chr3 (1-34)||(43185342-43185375)
chr3 (1-33)||(23609484-23609516)
chr3 (1-41)||(29517464-29517504)
chr3 (1-33)||(40710763-40710795)
chr3 (1-33)||(44976302-44976334)
chr3 (1-33)||(46336730-46336762)
chr3 (1-33)||(47109313-47109345)
chr3 (1-33)||(49610197-49610229)
[»] chr2 (31 HSPs)
chr2 (34-120)||(4860474-4860559)
chr2 (34-125)||(10163865-10163954)
chr2 (34-101)||(34070833-34070900)
chr2 (45-120)||(37625000-37625074)
chr2 (34-120)||(11563487-11563572)
chr2 (46-101)||(15080170-15080225)
chr2 (59-120)||(39187522-39187582)
chr2 (39-92)||(39376061-39376114)
chr2 (46-109)||(14954928-14954991)
chr2 (34-77)||(39187596-39187639)
chr2 (40-92)||(15090431-15090483)
chr2 (1-40)||(27862684-27862723)
chr2 (36-90)||(20681132-20681186)
chr2 (1-35)||(22154263-22154297)
chr2 (1-35)||(27863051-27863085)
chr2 (1-42)||(2443531-2443572)
chr2 (1-38)||(8495272-8495309)
chr2 (34-87)||(21620665-21620718)
chr2 (1-33)||(4898379-4898411)
chr2 (1-33)||(4945773-4945805)
chr2 (1-33)||(5005272-5005304)
chr2 (1-33)||(6713884-6713916)
chr2 (1-33)||(11216591-11216623)
chr2 (1-33)||(14309155-14309187)
chr2 (1-33)||(16198391-16198423)
chr2 (1-33)||(31072666-31072698)
chr2 (1-33)||(33677379-33677411)
chr2 (1-33)||(36173955-36173987)
chr2 (1-33)||(36845819-36845851)
chr2 (1-33)||(37985523-37985555)
chr2 (60-128)||(43664811-43664878)
[»] chr7 (22 HSPs)
chr7 (45-101)||(24393560-24393616)
chr7 (34-101)||(26776143-26776210)
chr7 (46-123)||(43131921-43131997)
chr7 (35-101)||(46923614-46923680)
chr7 (65-128)||(6271315-6271377)
chr7 (34-101)||(8240743-8240810)
chr7 (34-108)||(39927710-39927784)
chr7 (1-35)||(23709557-23709591)
chr7 (34-92)||(43093601-43093658)
chr7 (1-34)||(29669270-29669303)
chr7 (2-35)||(31346972-31347005)
chr7 (1-34)||(39938594-39938627)
chr7 (1-33)||(3458583-3458615)
chr7 (1-33)||(10657233-10657265)
chr7 (1-33)||(19293043-19293075)
chr7 (1-33)||(22326777-22326809)
chr7 (1-33)||(22369502-22369534)
chr7 (1-33)||(28703542-28703574)
chr7 (1-33)||(31466047-31466079)
chr7 (1-33)||(31502807-31502839)
chr7 (1-33)||(32467806-32467838)
chr7 (1-33)||(38074500-38074532)
[»] chr4 (22 HSPs)
chr4 (34-109)||(54933165-54933240)
chr4 (37-101)||(8069982-8070046)
chr4 (34-120)||(30666897-30666982)
chr4 (34-101)||(5817864-5817931)
chr4 (45-120)||(52355872-52355946)
chr4 (55-120)||(54317071-54317135)
chr4 (37-120)||(7209259-7209341)
chr4 (1-39)||(34735912-34735950)
chr4 (44-101)||(27981697-27981753)
chr4 (1-32)||(36878692-36878723)
chr4 (1-32)||(38615307-38615338)
chr4 (1-35)||(1788844-1788878)
chr4 (1-43)||(41608840-41608882)
chr4 (1-34)||(288342-288375)
chr4 (1-38)||(47477224-47477261)
chr4 (1-34)||(54270767-54270800)
chr4 (1-33)||(16032289-16032321)
chr4 (1-33)||(19877752-19877784)
chr4 (1-33)||(27851166-27851198)
chr4 (1-33)||(29495013-29495045)
chr4 (1-33)||(29832317-29832349)
chr4 (1-33)||(34002170-34002202)
[»] chr8 (22 HSPs)
chr8 (32-101)||(24456334-24456403)
chr8 (46-120)||(44328520-44328593)
chr8 (55-120)||(36604067-36604131)
chr8 (1-33)||(5449553-5449585)
chr8 (1-36)||(37163784-37163819)
chr8 (1-35)||(9470804-9470838)
chr8 (1-35)||(29342703-29342737)
chr8 (1-34)||(9724581-9724614)
chr8 (1-30)||(17524823-17524852)
chr8 (1-34)||(33012061-33012094)
chr8 (1-34)||(39628839-39628872)
chr8 (1-34)||(39638389-39638422)
chr8 (1-34)||(42827736-42827769)
chr8 (2-35)||(45439510-45439543)
chr8 (1-33)||(15225839-15225871)
chr8 (1-33)||(17949688-17949720)
chr8 (1-33)||(18526332-18526364)
chr8 (1-33)||(31602965-31602997)
chr8 (1-33)||(31692733-31692765)
chr8 (34-90)||(43351971-43352027)
chr8 (60-120)||(43798739-43798798)
chr8 (1-33)||(44263358-44263390)
[»] chr6 (11 HSPs)
chr6 (34-120)||(5605307-5605391)
chr6 (46-101)||(29383947-29384001)
chr6 (60-125)||(179279-179345)
chr6 (1-33)||(21140002-21140034)
chr6 (1-35)||(10629567-10629601)
chr6 (8-41)||(15498092-15498125)
chr6 (1-33)||(2010319-2010351)
chr6 (1-41)||(10364722-10364762)
chr6 (57-101)||(26653331-26653375)
chr6 (57-101)||(26759299-26759343)
chr6 (1-33)||(32609791-32609823)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-35)||(11747-11781)
[»] scaffold0366 (1 HSPs)
scaffold0366 (1-35)||(13054-13088)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-35)||(17455-17489)
scaffold0074 (1-33)||(45580-45612)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-34)||(4231-4264)
[»] scaffold0262 (1 HSPs)
scaffold0262 (1-33)||(3757-3789)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-33)||(151638-151670)


Alignment Details
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 1867027 - 1866936
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaattt 124  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||||  |||||| ||||| ||||||||||||||||    
T  1867027 ataagttaagaaacttaaaatagaaattaaaaataaattttatattaaaagtataatttttgccacttttaagata-ttgaatgcacaaattt 1866936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 22874344 - 22874285
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttg 93  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||| ||||| |||||    
T  22874344 aagttaaggaatttaaaatgaaaattaaaaataaattttatattaaaaatataacttttg 22874285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 25650562 - 25650507
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttt 100  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||| ||||| ||||||    
T  25650562 cttaaaatggaaattaaaaataaattttatattaaaaatataacttttgaaacttt 25650507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27366484 - 27366518
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27366484 aaagcgacatacaatttggaacggagggagtataa 27366518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 33741640 - 33741696
Alignment:
Q  46 ttaaaatgaaaattaaaa-ataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| ||||| |||||||    
T  33741640 ttaaaatggaaattaaaaaataaattttatattgaaaatataacttttgcaactttt 33741696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 38869913 - 38869983
Alignment:
Q  48 aaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||| ||||||||||||||||||||||| ||| ||||| ||||| || |||| ||||| ||||||||||||    
T  38869913 aaaatggaaattaaaaataaattttatatt-aaaatataacttttgcaatttttaagata-ttgaatgcacaa 38869983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40365542 - 40365574
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    |||||||||||||||||||||||||||||||||    
T  40365542 aaagcgacatacaatttggaacggagggagtat 40365574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5070810 - 5070777
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  5070810 aaagcgacatacaatttgggacggagggagtata 5070777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9248959 - 9248926
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  9248959 aaagcgacatacaatttgggacggagggagtata 9248926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25538070 - 25538037
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  25538070 aaagcgacatacaatttgggacggagggagtata 25538037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7458607 - 7458575
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  7458607 aaagcgacatacaatttgggacggagggagtat 7458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18048600 - 18048568
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||||||||||| |||||    
T  18048600 aaagcgacatacaatttggaacggaggaagtat 18048568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39932842 - 39932810
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  39932842 aaagcgacatacaatttgggacggagggagtat 39932810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 19234946 - 19234862
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcaca 119  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| | |||||||||||    
T  19234946 aagttaaggaacttaaaatggaaattaaaaataaattttatattgaaagtataacttttgcaacttctgagaca-ttgaatgcaca 19234862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 43457927 - 43458000
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||||||||||||    
T  43457927 ttaaaatggaaattaaaaataaattttatattgaaagtataacttttgcaacttttaagaca-ttgaatgcacaa 43458000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 9424661 - 9424592
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||    
T  9424661 ataagttaaggaacttaaaatggaaattaaaaataaattttatattaaaaatataacttttgaaactttt 9424592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 26758611 - 26758542
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||| | |||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||    
T  26758611 ataagttaaggagcttaaaatgaaaattaaaaataaaatttatattgaaaatataacttttgaaactttt 26758542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 37633641 - 37633736
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaattttaag 128  Q
    |||||||||| |  |||||||| |||||||||||||||||||| |||||| ||||| ||||| ||||||| ||| | |||||||||||| |||||||    
T  37633641 ataagttaagtagattaaaatggaaattaaaaataaattttatgttgaaaatataacttttgaaacttttaagaca-ttgaatgcacaatttttaag 37633736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 42489211 - 42489266
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||    
T  42489211 ttaaaatggaaattaaaaataaattttatattaaaagtataacttttgcaactttt 42489266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 51690174 - 51690133
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtata 86  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  51690174 cttaaaatgaaaattaaaaataaattttatattgaaaatata 51690133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 26265006 - 26265061
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| ||||||||||||||||||||||| ||||| ||| |||| ||||||||    
T  26265006 ttaaaatggaaattaaaaataaattttatattaaaagtgtaatttttataactttt 26265061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 49497065 - 49497128
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatt 109  Q
    ||||||||||||||||||||| ||| |||||| ||||||||| ||||| |||| || |||||||    
T  49497065 ttaaaatgaaaattaaaaatatattatatattaaaagtataacttttgcaactcttaagatatt 49497128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 51417617 - 51417651
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  51417617 aaagcgacatacaatttgggacggagggagtataa 51417651  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3163206 - 3163173
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  3163206 aaagcgacatacaatttgggacggagggagtata 3163173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12959547 - 12959580
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  12959547 aaagcgacatacaatttgggacggagggagtata 12959580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15170316 - 15170349
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  15170316 aaagcgacatacaatttgggacggagggagtata 15170349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17180702 - 17180669
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  17180702 aaagcgacatacaatttgggacggagggagtata 17180669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34022423 - 34022456
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  34022423 aaagcgacatacaatttgggacggagggagtata 34022456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 40
Target Start/End: Original strand, 34967587 - 34967620
Alignment:
Q  7 acatacaatttggaacggagggagtataagttaa 40  Q
    ||||||||||||| ||||||||||||||||||||    
T  34967587 acatacaatttgggacggagggagtataagttaa 34967620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 39501708 - 39501679
Alignment:
Q  6 gacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||||||||||||||    
T  39501708 gacatacaatttggaacggagggagtataa 39501679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 52703401 - 52703368
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    |||| |||||||||||||||||||||||||||||    
T  52703401 aaagtgacatacaatttggaacggagggagtata 52703368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 290522 - 290554
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  290522 aaagcgacatacaatttgggacggagggagtat 290554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2733872 - 2733840
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  2733872 aaagcgacatacaatttgggacggagggagtat 2733840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7572556 - 7572588
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  7572556 aaagcgacatacaatttgggacggagggagtat 7572588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13387556 - 13387524
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  13387556 aaagcgacatacaatttgggacggagggagtat 13387524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16051899 - 16051931
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  16051899 aaagcgacatacaatttgggacggagggagtat 16051931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 32145613 - 32145645
Alignment:
Q  8 catacaatttggaacggagggagtataagttaa 40  Q
    ||||||||||||||||||||||||||| |||||    
T  32145613 catacaatttggaacggagggagtatatgttaa 32145645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46398629 - 46398597
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  46398629 aaagcgacatacaatttgggacggagggagtat 46398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46436533 - 46436565
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    |||||||| ||||||||||||||||||||||||    
T  46436533 aaagcgacgtacaatttggaacggagggagtat 46436565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 4228817 - 4228890
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||    
T  4228817 ttaaaatgaaatttaaaaataaattttatattgaaagtataacttttgttacttttaagata-ttgaatgcacaa 4228890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 54261814 - 54261888
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||| ||||| ||||||| ||||| ||||||||||||    
T  54261814 cttaaaaagaaaattaaaaataaattttatattaaaagtctaacttttgcaacttttaagata-ttgaatgcacaa 54261888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 37663059 - 37662996
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatt 109  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||  ||||||| |||||||    
T  37663059 ttaaaatggaaattaaaaataaattttatatcgaaagtataacttttacaacttttaagatatt 37662996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 44543045 - 44543086
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataa 87  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  44543045 ttaaaatgaaaattaaaaataaattttatattgaaaatataa 44543086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 44544752 - 44544799
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaatttt 92  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||||    
T  44544752 cttaaaatgaaaattaaaaataaattttatatttaaaatataattttt 44544799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 4239104 - 4239178
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattt-----tatattgaaagtataaattttgtaactttt 101  Q
    |||||||||| | |||||||||||| ||||||||||||||     |||||||||||||||| |||||| ||||||    
T  4239104 ataagttaaggagcttaaaatgaaatttaaaaataaattttactgtatattgaaagtataacttttgttactttt 4239178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 31197808 - 31197850
Alignment:
Q  46 ttaaaatgaaaattaaaaataaa-ttttatattgaaagtataa 87  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  31197808 ttaaaatgaaaattaaaaataaatttttatattgaaagtataa 31197850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 53200977 - 53200893
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcaca 119  Q
    ||||||| || ||||||||  ||||||||||||||||| ||||| ||||| ||| ||||| ||||||| ||| | |||||||||||    
T  53200977 aagttaataagcttaaaatagaaattaaaaataaatttgatattaaaagtgtaacttttgcaacttttaagaca-ttgaatgcaca 53200893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 16277708 - 16277637
Alignment:
Q  30 gtataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||| | | ||| ||||| ||||| ||||||||||||||||| ||| ||||| ||||| |||||||    
T  16277708 gtataagttagggagcttgaaatggaaatttaaaataaattttatattaaaaatataacttttgaaactttt 16277637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22926067 - 22926032
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataag 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  22926067 aaagcgacatacaatttgggacggagggagtataag 22926032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 23513143 - 23513174
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  23513143 aaagcgacatacaatttggaacggagggagta 23513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 11364802 - 11364874
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||  |||||||||| ||| || ||||||||||||||| ||||| ||||||| ||||| ||||||||||||    
T  11364802 ttaaaattgaaattaaaaaaaaaatt-atattgaaagtataacttttggaacttttaagata-ttgaatgcacaa 11364874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23307807 - 23307773
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  23307807 aaagcgacatacaatttgggacggagggagtataa 23307773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40501125 - 40501159
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  40501125 aaagcgacatacaatttgggacggagggagtataa 40501159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 43185375 - 43185342
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  43185375 aaagcgacatacaatttgggacggagggagtata 43185342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23609484 - 23609516
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  23609484 aaagcgacatacaatttgggacggagggagtat 23609516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29517464 - 29517504
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagttaag 41  Q
    ||||||||||||||||| |||||||||||||| || |||||    
T  29517464 aaagcgacatacaatttcgaacggagggagtacaacttaag 29517504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40710763 - 40710795
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  40710763 aaagcgacatacaatttgggacggagggagtat 40710795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44976334 - 44976302
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  44976334 aaagcgacatacaatttgggacggagggagtat 44976302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 46336762 - 46336730
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  46336762 aaagcgacatacaatttgggacggagggagtat 46336730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 47109313 - 47109345
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  47109313 aaagcgacatacaatttgggacggagggagtat 47109345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49610197 - 49610229
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  49610197 aaagcgacatacaatttgggacggagggagtat 49610229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 4860474 - 4860559
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||||  |||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| | ||||||||||||    
T  4860474 aagttaagaagtttaaaatggaaattaaaaataaattttatattgaaagtataatttttgcaacttttaagaca-ttgaatgcacaa 4860559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 10163954 - 10163865
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaatttt 125  Q
    ||||||| ||| ||||||| |||||| ||||||||||||||||||||||||||| ||||  ||| |||||||||   |||||||||||||||    
T  10163954 aagttaaaaaatttaaaataaaaatttaaaataaattttatattgaaagtataacttttacaacctttgagata--agaatgcacaaatttt 10163865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 34070900 - 34070833
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  34070900 aagttaaggaacttaaaatataaattaaaaataaattttatattgaaagtattacttttgcaactttt 34070833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 37625074 - 37625000
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||| ||||||||||||||||||||||||||| ||||| ||||  ||||||| ||||| ||||||||||||    
T  37625074 cttaaaatggaaattaaaaataaattttatattgaaaatataacttttaaaacttttaagata-ttgaatgcacaa 37625000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 11563572 - 11563487
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||  |||| ||||||| ||| | ||||||||||||    
T  11563572 aagttaagaagcttaaaatggaaatttaaaataaattttatattgaaaatataacctttgaaacttttaagaca-ttgaatgcacaa 11563487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 15080225 - 15080170
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||||| ||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  15080225 ttaaaataaaaattaaaaatatattttatattgaaagtataacttttgcaactttt 15080170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 39187582 - 39187522
Alignment:
Q  59 taaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||| ||||| ||||||||||||    
T  39187582 taaaaataaattttatattgaaaatataacttttgcaacttttaagata-ttgaatgcacaa 39187522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 39376061 - 39376114
Alignment:
Q  39 aagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaatttt 92  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||| ||||    
T  39376061 aagaagcttaaaatgaaaattaaaaataaattttatattataagtataactttt 39376114  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 14954991 - 14954928
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatt 109  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||  || |||| |||||||    
T  14954991 ttaaaataaaaattaaaaataaattttatattgaaaatataacttttaaaatttttaagatatt 14954928  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 39187639 - 39187596
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatatt 77  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  39187639 aagttaaggagcttaaaatgaaaattaaaaataaattttatatt 39187596  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 15090431 - 15090483
Alignment:
Q  40 agaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaatttt 92  Q
    |||| ||||||||| ||||||||||||||||||||||| ||| ||||| ||||    
T  15090431 agaagcttaaaatggaaattaaaaataaattttatattaaaaatataactttt 15090483  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27862723 - 27862684
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagttaa 40  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  27862723 aaagcgacatacagtttggaacggagggagtataaattaa 27862684  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 20681186 - 20681132
Alignment:
Q  36 gttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaatt 90  Q
    |||||| |||| |||| |||||| |  ||||||||||||||||||||||||||||    
T  20681186 gttaaggaactaaaaaagaaaataatgaataaattttatattgaaagtataaatt 20681132  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 22154263 - 22154297
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  22154263 aaagcgacatacaatttgggacggagggagtataa 22154297  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 27863051 - 27863085
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  27863051 aaagcgacatacaatttgggacggagggagtataa 27863085  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2443531 - 2443572
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagttaaga 42  Q
    ||||||||||||||||||||||||||| ||||| | ||||||    
T  2443531 aaagcgacatacaatttggaacggaggaagtattaattaaga 2443572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8495309 - 8495272
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagtt 38  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  8495309 aaagcgacatacaatttgggacggagggagtaaaagtt 8495272  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 21620665 - 21620718
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataa 87  Q
    |||||||| ||||||||||| |||| |||||||| ||||||| ||||| |||||    
T  21620665 aagttaaggaacttaaaatggaaataaaaaataagttttataatgaaaatataa 21620718  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4898379 - 4898411
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  4898379 aaagcgacatacaatttgggacggagggagtat 4898411  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4945773 - 4945805
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  4945773 aaagcgacatacaatttgggacggagggagtat 4945805  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5005272 - 5005304
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  5005272 aaagcgacatacaatttgggacggagggagtat 5005304  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6713916 - 6713884
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||||||||||| |||||    
T  6713916 aaagcgacatacaatttggaacggaggaagtat 6713884  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11216623 - 11216591
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  11216623 aaagcgacatacaatttgggacggagggagtat 11216591  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14309155 - 14309187
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  14309155 aaagcgacatacaatttgggacggagggagtat 14309187  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16198423 - 16198391
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  16198423 aaagcgacatacaatttgggacggagggagtat 16198391  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31072666 - 31072698
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31072666 aaagcgacatacaatttgggacggagggagtat 31072698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33677379 - 33677411
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  33677379 aaagcgacatacaatttgggacggagggagtat 33677411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36173987 - 36173955
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||||||| |||||||||    
T  36173987 aaagcgacatacaatttggaacgaagggagtat 36173955  T

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Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36845851 - 36845819
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  36845851 aaagcgacatacaatttgggacggagggagtat 36845819  T

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Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37985555 - 37985523
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  37985555 aaagcgacatacaatttgggacggagggagtat 37985523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 43664878 - 43664811
Alignment:
Q  60 aaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaattttaag 128  Q
    |||||||||| ||| ||||||| ||||| ||||  ||||||| |||| ||||||||||||| |||||||    
T  43664878 aaaaataaatattacattgaaaatataagtttttaaacttttaagat-tttgaatgcacaatttttaag 43664811  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 24393616 - 24393560
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24393616 cttaaaatgaaaattaaaaataaattttatattgaaagtataatttttgcaactttt 24393560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 26776210 - 26776143
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| | ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  26776210 aagttaaggagcttaaaatagaaattaaaaataaattttatattgaaagtataacttttgtaactttt 26776143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 123
Target Start/End: Original strand, 43131921 - 43131997
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaatt 123  Q
    |||||||| ||||| ||||||||||||||||||||||||||| ||||| || |||| ||||| ||||||||| |||||    
T  43131921 ttaaaatggaaattgaaaataaattttatattgaaagtataacttttgcaatttttaagata-ttgaatgcataaatt 43131997  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 46923614 - 46923680
Alignment:
Q  35 agttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||||| | |||||||||||||||||||||||||||| |||| ||| ||||| ||||| |||||||    
T  46923614 agttaaggagcttaaaatgaaaattaaaaataaattttgtattcaaaatataacttttgaaactttt 46923680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 6271315 - 6271377
Alignment:
Q  65 taaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaaattttaag 128  Q
    ||||||||||||||||||||||| ||||| ||||||| || || |||||||||||| |||||||    
T  6271315 taaattttatattgaaagtataacttttgcaacttttaagcta-ttgaatgcacaagttttaag 6271377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 8240810 - 8240743
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| | |||||||||||||| |||||||| ||||||||| ||| ||||| ||||| |||||||    
T  8240810 aagttaaggagcttaaaatgaaaataaaaaataagttttatatttaaaatataatttttgaaactttt 8240743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 39927784 - 39927710
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatat 108  Q
    |||||||| | ||||||||  ||||||||||||||||||||||| ||| ||||| ||||| || |||| ||||||    
T  39927784 aagttaaggagcttaaaatagaaattaaaaataaattttatattaaaaatataacttttgaaatttttaagatat 39927710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 23709591 - 23709557
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  23709591 aaagcgacatacaatttgggacggagggagtataa 23709557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 43093601 - 43093658
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaatttt 92  Q
    ||||||||||  |||||||| ||||||||||| |||||||| |||||| ||||||||||    
T  43093601 aagttaagaagtttaaaatggaaattaaaaat-aattttattttgaaaatataaatttt 43093658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29669303 - 29669270
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  29669303 aaagcgacatacaatttgggacggagggagtata 29669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 31346972 - 31347005
Alignment:
Q  2 aagcgacatacaatttggaacggagggagtataa 35  Q
    |||||||||||||||||| |||||||||||||||    
T  31346972 aagcgacatacaatttgggacggagggagtataa 31347005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39938627 - 39938594
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  39938627 aaagcgacatacaatttggtacggagggagtata 39938594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3458583 - 3458615
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  3458583 aaagcgacatacaatttgggacggagggagtat 3458615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10657233 - 10657265
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  10657233 aaagcgacatacaatttgggacggagggagtat 10657265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19293075 - 19293043
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  19293075 aaagcgacatacaatttgggacggagggagtat 19293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22326777 - 22326809
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  22326777 aaagcgacatacaatttgggacggagggagtat 22326809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22369534 - 22369502
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  22369534 aaagcgacatacaatttgggacggagggagtat 22369502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28703574 - 28703542
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  28703574 aaagcgacatacaatttgggacggagggagtat 28703542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31466079 - 31466047
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31466079 aaagcgacatacaatttgggacggagggagtat 31466047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31502839 - 31502807
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31502839 aaagcgacatacaatttgggacggagggagtat 31502807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32467838 - 32467806
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  32467838 aaagcgacatacaatttgggacggagggagtat 32467806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38074532 - 38074500
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    |||| ||||||||||||||||||||||||||||    
T  38074532 aaagtgacatacaatttggaacggagggagtat 38074500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 54933240 - 54933165
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatt 109  Q
    |||||||||| ||||||| | ||||||||||||||||||||||| ||||||||| ||||| ||||||| |||||||    
T  54933240 aagttaagaagcttaaaaaggaaattaaaaataaattttatattaaaagtataacttttgcaacttttaagatatt 54933165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 8070046 - 8069982
Alignment:
Q  37 ttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||| |||||||    
T  8070046 ttaaggaacttaaaatgaaaattaaagataaattttatattgaaaatataatttttgaaactttt 8069982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 30666982 - 30666897
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||| | ||||||||  |||||||||||||||||||||||| |||||||| ||||| ||||||| ||| | ||||||||||||    
T  30666982 aagttaaggagcttaaaatagaaattaaaaataaattttatattggaagtataacttttgcaacttttaagaca-ttgaatgcacaa 30666897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 5817931 - 5817864
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||| | ||||||||| ||||||||||||| |||| |||| ||||||||| |||||||||||||    
T  5817931 aagttaaggagcttaaaatggaaattaaaaataatttttttattaaaagtataacttttgtaactttt 5817864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 52355872 - 52355946
Alignment:
Q  45 cttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||| ||||| ||||||| ||| | ||||||||||||    
T  52355872 cttaaaatggaaattaaaaataaattttataatgaaaatataacttttgaaacttttaagaca-ttgaatgcacaa 52355946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 54317135 - 54317071
Alignment:
Q  55 aaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| | ||||||||||||    
T  54317135 aaattaaaaataaattttatattgaaagtttaacttttgcaacatttgagaca-ttgaatgcacaa 54317071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 7209341 - 7209259
Alignment:
Q  37 ttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||| || |||||||  |||| |||||| ||||||||||||||||||||| ||||| ||||||| ||| | ||||||||||||    
T  7209341 ttaaggaatttaaaatagaaataaaaaattaattttatattgaaagtataacttttgcaacttttaagaca-ttgaatgcacaa 7209259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34735950 - 34735912
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagtta 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  34735950 aaagcgacatacaatttgggacggagggagtataagtta 34735912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 27981697 - 27981753
Alignment:
Q  44 acttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||  ||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  27981697 acttaaaatagaaattaaaaataaattttatattgaaaatat-aattttgaaactttt 27981753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36878692 - 36878723
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  36878692 aaagcgacatacaatttggaacggagggagta 36878723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38615307 - 38615338
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagta 32  Q
    ||||||||||||||||||||||||||||||||    
T  38615307 aaagcgacatacaatttggaacggagggagta 38615338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1788844 - 1788878
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  1788844 aaagcgacatacaatttgggacggagggagtataa 1788878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41608840 - 41608882
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagttaagaa 43  Q
    ||||||||||||||||||| ||||||||||||||  |||||||    
T  41608840 aaagcgacatacaatttgggacggagggagtatagtttaagaa 41608882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 288375 - 288342
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  288375 aaagcgacatacaatttgggacggagggagtata 288342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47477224 - 47477261
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagtt 38  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  47477224 aaagcgacatataatttagaacggagggagtataagtt 47477261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 54270800 - 54270767
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  54270800 aaagcgacatacaatttgggacggagggagtata 54270767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16032321 - 16032289
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||| |||||||||||||||    
T  16032321 aaagcgacatacaatttagaacggagggagtat 16032289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19877784 - 19877752
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  19877784 aaagcgacatacaatttgggacggagggagtat 19877752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27851198 - 27851166
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  27851198 aaagcgacatacaatttgggacggagggagtat 27851166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29495013 - 29495045
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  29495013 aaagcgacatacaatttgggacggagggagtat 29495045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29832317 - 29832349
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  29832317 aaagcgacatacaatttgggacggagggagtat 29832349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34002202 - 34002170
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  34002202 aaagcgacatacaatttgggacggagggagtat 34002170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 24456334 - 24456403
Alignment:
Q  32 ataagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||| | ||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||||    
T  24456334 ataagttaaggagcttaaaatggaaattataaataaattttatattgaaagtataacttttgcaactttt 24456403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 44328593 - 44328520
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||| ||||||||||||||||||||||| ||||||||| ||||| || |||| ||| | ||||||||||||    
T  44328593 ttaaaatggaaattaaaaataaattttatattaaaagtataacttttgcaatttttaagaca-ttgaatgcacaa 44328520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 36604067 - 36604131
Alignment:
Q  55 aaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    ||||||||||||||||||||||||||| ||||| || || ||||||| ||||| ||||||||||||    
T  36604067 aaattaaaaataaattttatattgaaaatataatttctgaaacttttaagata-ttgaatgcacaa 36604131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5449553 - 5449585
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    |||||||||||||||||||||||||||||||||    
T  5449553 aaagcgacatacaatttggaacggagggagtat 5449585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37163784 - 37163819
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataag 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  37163784 aaagcgacatacaatttgggacggagggagtataag 37163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9470838 - 9470804
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  9470838 aaagcgacatacaatttgggacggagggagtataa 9470804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 29342737 - 29342703
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  29342737 aaagcgacatacaatttgggacggagggagtataa 29342703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9724614 - 9724581
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  9724614 aaagcgacatacaatttgggacggagggagtata 9724581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 17524823 - 17524852
Alignment:
Q  1 aaagcgacatacaatttggaacggagggag 30  Q
    ||||||||||||||||||||||||||||||    
T  17524823 aaagcgacatacaatttggaacggagggag 17524852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33012094 - 33012061
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  33012094 aaagcgacatacaatttgggacggagggagtata 33012061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39628872 - 39628839
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  39628872 aaagcgacatacaatttgggacggagggagtata 39628839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 39638422 - 39638389
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  39638422 aaagcgacatacaatttgggacggagggagtata 39638389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42827736 - 42827769
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  42827736 aaagcgacatacaatttgggacggagggagtata 42827769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 45439543 - 45439510
Alignment:
Q  2 aagcgacatacaatttggaacggagggagtataa 35  Q
    |||||||||||||||||| |||||||||||||||    
T  45439543 aagcgacatacaatttgggacggagggagtataa 45439510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15225871 - 15225839
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  15225871 aaagcgacatacaatttgggacggagggagtat 15225839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17949688 - 17949720
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  17949688 aaagcgacatacaatttgggacggagggagtat 17949720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18526364 - 18526332
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  18526364 aaagcgacatacaatttgggacggagggagtat 18526332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31602965 - 31602997
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31602965 aaagcgacatacaatttgggacggagggagtat 31602997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31692765 - 31692733
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  31692765 aaagcgacatacaatttgggacggagggagtat 31692733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 43351971 - 43352027
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaatt 90  Q
    ||||||||||||| |||| | |||| | ||||||||||| |||||||| ||||||||    
T  43351971 aagttaagaaactaaaaaaggaaataataaataaattttgtattgaaattataaatt 43352027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 43798798 - 43798739
Alignment:
Q  60 aaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||||||||||||||||| | |||  |||| ||||||||||| | ||||||||||||    
T  43798798 aaaaataaattttatattgaaaatttaatatttgcaacttttgagaca-ttgaatgcacaa 43798739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44263358 - 44263390
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  44263358 aaagcgacatacaatttgggacggagggagtat 44263390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 5605391 - 5605307
Alignment:
Q  34 aagttaagaaacttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaacttttgagatatttgaatgcacaa 120  Q
    |||||||| ||||||||||| ||||||||||||||||||| |||||| | | || |||| |||||||| ||||| ||||||||||||    
T  5605391 aagttaaggaacttaaaatggaaattaaaaataaattttaaattgaatgca-aacttttataacttttaagata-ttgaatgcacaa 5605307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 29383947 - 29384001
Alignment:
Q  46 ttaaaatgaaaattaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||    
T  29383947 ttaaaatgaaaattaaaa-taaattttatattgaaagtataacttttccaactttt 29384001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 179279 - 179345
Alignment:
Q  60 aaaaataaattttatattgaaag--tataaattttgtaacttttgagatatttgaatgcacaaatttt 125  Q
    ||||| ||| |||||||||||||  ||||| ||||||||||||| ||||| |||||||||||||||||    
T  179279 aaaaaaaaaatttatattgaaagtatataatttttgtaacttttaagata-ttgaatgcacaaatttt 179345  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21140002 - 21140034
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    |||||||||||||||||||||||||||||||||    
T  21140002 aaagcgacatacaatttggaacggagggagtat 21140034  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 10629567 - 10629601
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  10629567 aaagcgacatacaatttgggacggagggagtataa 10629601  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 15498092 - 15498125
Alignment:
Q  8 catacaatttggaacggagggagtataagttaag 41  Q
    |||||||||||| |||||||||||||||||||||    
T  15498092 catacaatttgggacggagggagtataagttaag 15498125  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2010319 - 2010351
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  2010319 aaagcgacatacaatttgggacggagggagtat 2010351  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10364722 - 10364762
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataagttaag 41  Q
    |||| |||||||||||||| ||||||||||||||| |||||    
T  10364722 aaagtgacatacaatttgggacggagggagtataaattaag 10364762  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 26653331 - 26653375
Alignment:
Q  57 attaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  26653331 attaaaaataaatttcatattgaaaatataacttttgaaactttt 26653375  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 26759299 - 26759343
Alignment:
Q  57 attaaaaataaattttatattgaaagtataaattttgtaactttt 101  Q
    ||||||||||||||| ||||||||| ||||| ||||| |||||||    
T  26759299 attaaaaataaatttcatattgaaaatataacttttgaaactttt 26759343  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32609823 - 32609791
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  32609823 aaagcgacatacaatttgggacggagggagtat 32609791  T

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Target: scaffold0459 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 11747 - 11781
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  11747 aaagcgacatacaatttgggacggagggagtataa 11781  T

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Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 13054 - 13088
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  13054 aaagcgacatacaatttgggacggagggagtataa 13088  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17489 - 17455
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtataa 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  17489 aaagcgacatacaatttgggacggagggagtataa 17455  T

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Target: scaffold0074; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45612 - 45580
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  45612 aaagcgacatacaatttgggacggagggagtat 45580  T

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Target: scaffold0154 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4231 - 4264
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtata 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  4231 aaagcgacatacaatttgggacggagggagtata 4264  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3789 - 3757
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  3789 aaagcgacatacaatttgggacggagggagtat 3757  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 151670 - 151638
Alignment:
Q  1 aaagcgacatacaatttggaacggagggagtat 33  Q
    ||||||||||||||||||| |||||||||||||    
T  151670 aaagcgacatacaatttgggacggagggagtat 151638  T

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