View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_high_16 (Length: 255)
Name: NF17831_high_16
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 177
Target Start/End: Original strand, 490367 - 490532
Alignment:
| Q |
11 |
cacagatttgatcatctaataattgtttgtatgaaaatgattgtgtnnnnnnnccttcatttcataaaaggttattttggaaattcaatttcccaagtag |
110 |
Q |
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| T |
490367 |
cacagatttggtcatctaataattgtttatatgaaaatggttgtgtaaaaaaacct-catttcataaaagattattttggaaattcaatttcccaagtag |
490465 |
T |
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| Q |
111 |
ttatgaagtttttctacacgaagaaatcaaaagatgtcatcaaaaattaaaaacacccaaaacatat |
177 |
Q |
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| T |
490466 |
ttatgaagtttttctacacgaagaaatcaaaagatgtcatcaaaaattaaaaacacccaaaacatat |
490532 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 31696185 - 31696236
Alignment:
| Q |
153 |
aaaattaaaaacacccaaaacatatcccagagttgaatttagtacgtctata |
204 |
Q |
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| T |
31696185 |
aaaattaaaaacacccaaaacatatcacatggttgaatttagtacctctata |
31696236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 31696086 - 31696141
Alignment:
| Q |
67 |
tcatttcataaaaggttattttggaaattcaatttcccaagtagttatgaagtttt |
122 |
Q |
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| T |
31696086 |
tcatttaacaaaagattattttggaaattcaattttcctagtagttacgaagtttt |
31696141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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