View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17831_high_6 (Length: 443)
Name: NF17831_high_6
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 237 - 428
Target Start/End: Complemental strand, 25192548 - 25192357
Alignment:
| Q |
237 |
gaccccttaagtggaatcagctacaaaaatttacaacaccataactattgtaaataaatcaattagatttagatttttcttagtgcatgtttgaattgat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25192548 |
gaccccttaagtggaatcagctacaaaaatttacaacaccataactattgtaaataaatcaattagatttagatttttcttagtgcatgtttgaattgat |
25192449 |
T |
|
| Q |
337 |
gatgagtttaacatagtcacaatcagataccataattttgacaaaatatagatttagaacatcaacaaaatcactgtttatttcatcaaact |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25192448 |
gatgagtttaacatagtcacaatcagataccataattttgacaaaatatagatttagaacatcaataaaatcactgtttatttcatcaaact |
25192357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 25192777 - 25192618
Alignment:
| Q |
17 |
aatatccagacacaaattcacaaggggttgttgagtgaagattccttcatctcaaaaaagcagaacaagacaaaaacataaactttcaaacaacatcttc |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25192777 |
aatatccagacacaaattcacaagggattgttgagtgaagattccttcatctcaaaaaagcagaacaagacaaaaacataaactttcaaacaacatcttc |
25192678 |
T |
|
| Q |
117 |
catgctccttatacaaaaaagatattatgacaaccaaacaagtcatattgagatgcaaaa |
176 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25192677 |
catgccccttatacaaaaaagatattatgacaaccaaacaagtcatattgagatgcaaaa |
25192618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University