View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_10 (Length: 363)
Name: NF17831_low_10
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 45395480 - 45395736
Alignment:
| Q |
18 |
catgatgacccatttgaaggaacccattaatggtgttgaagctacattaaaggtaaacaagtatgnnnnnnnnnnnnngtttcacgatggtcaaaaattt |
117 |
Q |
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| T |
45395480 |
catgaagacccattttaaggaacccattaatggtgttgaagctacattaaaggtaaacaagtatgaaaaaaaaatct-gttgcacgatggtaaaaaattt |
45395578 |
T |
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| Q |
118 |
gaagcaaataatgggttttgcttgagtttttaagccaattagtgttgtattttggagaagaacatcaagttttttaaatcagtgttttgagatttttgtg |
217 |
Q |
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| T |
45395579 |
gaagcaaataatgggttttgcttgagtttttaagccaattagtgttgtattttggagaagaacatcaagttttttaaatcagtgttttgagatttttgtg |
45395678 |
T |
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| Q |
218 |
gtgatgtgatttttgtatggatacggattgagcaagtgattttatgatctgggttttg |
275 |
Q |
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| T |
45395679 |
gtgatgtgatttttgtatggatacggattgagaaagtgattttatgatttgggttttg |
45395736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 9170211 - 9170464
Alignment:
| Q |
18 |
catgatgacccatttgaaggaacccattaatggtgttgaagctacattaaaggtaaacaagtatgnnnnnnnnnnnnngtttcacgatggtcaaaaattt |
117 |
Q |
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| T |
9170211 |
catgaagacccattttaaggaacccattaatggcgttgaagctacattaaaggtaaacaagcatgaaaaaaaaatct-gtttcacgagggtcaaaaattc |
9170309 |
T |
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| Q |
118 |
gaagcaaataatgggttttgcttgagtttttaagccaattagtgttgtattttggagaagaacatcaagttttttaaatcagtgttttgagatttttgtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
9170310 |
gaagcaaataatgggttttgcttgagtttttaagccagtttgtgttgtattttggagaagaacatcaagtttttcaaataagtgttttgagatttctgtg |
9170409 |
T |
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| Q |
218 |
gtgatgtgatttttgtatggatacggattgagcaagtgattttatgatctgggtt |
272 |
Q |
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| T |
9170410 |
gtgatgtgatttttgtatggatacggattgagaaagtgattttatgatatgggtt |
9170464 |
T |
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