View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_12 (Length: 327)
Name: NF17831_low_12
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 2672559 - 2672827
Alignment:
| Q |
12 |
acgtttgtgttgtgtatccgttagacnnnnnnntaatactactaatgcatgcatttagctatatatagttcatcacgtgttactttaaggtgttaatata |
111 |
Q |
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| T |
2672559 |
acgtttgtgttgtgtatccgttagacaaaaaaataatactactaatgcatgcatttagctatatatagttcatcacgtgttactttgaggtgttaatata |
2672658 |
T |
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| Q |
112 |
tgttgttaatttcagtgaggcagaatgggactccttaacttgaaagggacattaggatcatcatccatgattttaaggaaagttgagtcaaaccgaaggg |
211 |
Q |
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| T |
2672659 |
tgttgttaatttcaatgaggcagaatggaactccttaacttgaaagggacattaggatcatcatccatggttttaaggaaagttgagtcaaaccgaaggg |
2672758 |
T |
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| Q |
212 |
aaggtgcatattttaaattatcttctctatatatatgtagtggttcagtccattataaatttttgtaca |
280 |
Q |
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| T |
2672759 |
aaggtgcatattttaaattatcttctctatatatatgtagtggttcagtccattataaatttttgtaca |
2672827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 104 - 304
Target Start/End: Original strand, 2690849 - 2691046
Alignment:
| Q |
104 |
ttaatatatgttgttaatttcagtgaggcagaatgggactccttaacttgaaagggacattaggatcatcatccatgattttaaggaaagttgagtcaaa |
203 |
Q |
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| T |
2690849 |
ttaatatatgttgttaatttcagtgaggcagaatgggactccttagtatgaaagggacattaggatcatcatccatggttttagggaaagttgagtcaaa |
2690948 |
T |
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| Q |
204 |
ccgaagg---gaaggtgcatattttaaattatcttctctatatatatgtagtggttcagtccattataaatttttgtacaaagatagagagatagtaaaa |
300 |
Q |
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| T |
2690949 |
ccgaagggaagaagatgcatattttaaattatcttccctata------tagtggttcagtccattataagtttttgtacaaagatagagagatattaaaa |
2691042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 2672848 - 2672903
Alignment:
| Q |
268 |
aaatttttgtacaaagatagagagatagtaaaatgcagacaagggagaagtattat |
323 |
Q |
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| T |
2672848 |
aaatttttgtacaaagatagagagatagtaaaatgcagacaagggagaagtgttat |
2672903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 2690454 - 2690505
Alignment:
| Q |
46 |
aatactactaatgcatgcatttagc----tatatatagttcatcacgtgtta |
93 |
Q |
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| T |
2690454 |
aataatactaatgcatgcatttagctagctatatatagttcatcacgtgtta |
2690505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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