View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_18 (Length: 244)
Name: NF17831_low_18
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 34068101 - 34068329
Alignment:
| Q |
1 |
agtttacactattaggtcaatttcctttcacattcaagatctagagaacaaaagataccttatatacaaagtcctttagaaaaattcctagcatccaacc |
100 |
Q |
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| T |
34068101 |
agtttacactattaggtcaatttcctttcacattcaagatctagagaacaaaagataccttatatacaaagtcctttagaaaaattcctagcatccaacc |
34068200 |
T |
|
| Q |
101 |
acnnnnnnnncaagagcatctttcacgtgatgacaagctcacattcatgggttaatggcttttgtgtcagccattccctcctcctcttcatgaaagcatc |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34068201 |
acaaaaaaaacaagagcatctttcacgtgatgacaagctcacattcatgggttaatggcttttgtgtcagccattccctcctcctcttcatgaaagcatc |
34068300 |
T |
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| Q |
201 |
tatttgtccccaatccatgtgataataat |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34068301 |
tatttgtccccaatccatgtgataataat |
34068329 |
T |
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