View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17831_low_2 (Length: 702)

Name: NF17831_low_2
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17831_low_2
NF17831_low_2
[»] chr3 (5 HSPs)
chr3 (431-536)||(27100770-27100870)
chr3 (73-197)||(27102233-27102356)
chr3 (534-582)||(27107186-27107234)
chr3 (539-582)||(27100705-27100748)
chr3 (415-536)||(27107253-27107377)
[»] chr5 (1 HSPs)
chr5 (97-158)||(12376944-12377006)
[»] chr4 (3 HSPs)
chr4 (216-261)||(51736245-51736291)
chr4 (209-245)||(6462788-6462824)
chr4 (209-245)||(29006863-29006899)
[»] chr2 (1 HSPs)
chr2 (212-250)||(34438776-34438814)
[»] chr1 (2 HSPs)
chr1 (216-250)||(34598933-34598967)
chr1 (212-240)||(1035918-1035946)
[»] chr8 (2 HSPs)
chr8 (212-245)||(8739626-8739659)
chr8 (216-245)||(10983883-10983912)
[»] chr6 (1 HSPs)
chr6 (216-245)||(3673848-3673877)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 431 - 536
Target Start/End: Complemental strand, 27100870 - 27100770
Alignment:
Q  431 caaataaaagttgccacaagcaaatagtcaagcagaagttcacaccgtgcattaaatacaaaaagcgaaaaccttgtcctcatagttagggctgacggtg 530  Q
    |||||||||||||||||||||||||||||||  ||||||||||||     ||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  27100870 caaataaaagttgccacaagcaaatagtcaatgagaagttcacac-----attaaatgcaaaaagcgaaaaccttgtcctcatagttagggctgacgatg 27100776  T
Q  531 ctgatg 536  Q
    ||||||    
T  27100775 ctgatg 27100770  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 27102356 - 27102233
Alignment:
Q  73 atcacactcacaacactctcaattaatttaacaaaaaacaatcatcattttcattttattatttttatcaaaacataataatattcgatccaattaatat 172  Q
    |||||| |||| |||||||||||||||||||||||||    |||||| ||||| |||||| |||||||||||||||||||||||||   |||||||||||    
T  27102356 atcacattcacgacactctcaattaatttaacaaaaacggttcatcactttcaatttattctttttatcaaaacataataatattcataccaattaatat 27102257  T
Q  173 ccatacaccctccaatcattattat 197  Q
    ||||||| |||||||||||||||||    
T  27102256 ccataca-cctccaatcattattat 27102233  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 534 - 582
Target Start/End: Complemental strand, 27107234 - 27107186
Alignment:
Q  534 atgcacacatttcacatttgcagcaacatttgtcaaagaaggttcacca 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27107234 atgcacacatttcacatttgcagcaacatttgtcaaagaaggttcacca 27107186  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 539 - 582
Target Start/End: Complemental strand, 27100748 - 27100705
Alignment:
Q  539 cacatttcacatttgcagcaacatttgtcaaagaaggttcacca 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27100748 cacatttcacatttgcagcaacatttgtcaaagaaggttcacca 27100705  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 415 - 536
Target Start/End: Complemental strand, 27107377 - 27107253
Alignment:
Q  415 gtgggttgtgtccagccaaataaaagttgccacaagcaaatagtcaagcagaagttcacaccgtgcattaaatacaaaaagcgaaaaccttgtcct---- 510  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||| ||  || ||  || | |||||||||| ||||||| ||||||||||||||        
T  27107377 gtgggttgtgtccagccaaataaagtttgctacaagcaaaaagtcatgcccaa-ttgtcaacatgcattaaatgcaaaaagtgaaaaccttgtcctctag 27107279  T
Q  511 catagttagggctgacggtgctgatg 536  Q
    |||||||| || ||||||||||||||    
T  27107278 catagttatggttgacggtgctgatg 27107253  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 12376944 - 12377006
Alignment:
Q  97 aatttaacaaaaaacaat-catcattttcattttattatttttatcaaaacataataatattc 158  Q
    |||||||||||||| | | |||||| |||||||| || |||||| ||||||||||||||||||    
T  12376944 aatttaacaaaaaaaagttcatcatattcattttcttctttttaccaaaacataataatattc 12377006  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 51736245 - 51736291
Alignment:
Q  216 tagattcattcaataaatgatgtatatgat-tcatacatcatttatt 261  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||    
T  51736245 tagattcattcaataaatgatgtatgtgatcacatacatcatttatt 51736291  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 6462824 - 6462788
Alignment:
Q  209 tattttctagattcattcaataaatgatgtatatgat 245  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  6462824 tattttttagattcattcaataaatgatgtatgtgat 6462788  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 29006863 - 29006899
Alignment:
Q  209 tattttctagattcattcaataaatgatgtatatgat 245  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  29006863 tattttttagattcattcaataaatgatgtatgtgat 29006899  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 34438776 - 34438814
Alignment:
Q  212 tttctagattcattcaataaatgatgtatatgattcata 250  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  34438776 tttctagattcattcaattaatgatgtatatgatccata 34438814  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 34598967 - 34598933
Alignment:
Q  216 tagattcattcaataaatgatgtatatgattcata 250  Q
    |||||||||||||| ||||||||||||||||||||    
T  34598967 tagattcattcaattaatgatgtatatgattcata 34598933  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 1035918 - 1035946
Alignment:
Q  212 tttctagattcattcaataaatgatgtat 240  Q
    |||||||||||||||||||||||||||||    
T  1035918 tttctagattcattcaataaatgatgtat 1035946  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 8739626 - 8739659
Alignment:
Q  212 tttctagattcattcaataaatgatgtatatgat 245  Q
    |||||||||||||| |||||||||||||||||||    
T  8739626 tttctagattcattgaataaatgatgtatatgat 8739659  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 245
Target Start/End: Original strand, 10983883 - 10983912
Alignment:
Q  216 tagattcattcaataaatgatgtatatgat 245  Q
    ||||||||||||||||||||||||||||||    
T  10983883 tagattcattcaataaatgatgtatatgat 10983912  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 3673877 - 3673848
Alignment:
Q  216 tagattcattcaataaatgatgtatatgat 245  Q
    ||||||||||||||||||||||||||||||    
T  3673877 tagattcattcaataaatgatgtatatgat 3673848  T

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