View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_20 (Length: 234)
Name: NF17831_low_20
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 1590375 - 1590514
Alignment:
| Q |
1 |
catcaacaccatcaatcatctatattttacttattcccctctctatgaacataaaccaaaaagaaatcaacaagctttatcactagagtttccacaaaac |
100 |
Q |
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| T |
1590375 |
catcaacaccatcaatcatctatattttacttattcccctctctatgaacataaaccaaaaagaaatcaacaagctttatcactagagtttccacaaaac |
1590474 |
T |
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| Q |
101 |
tctagatatatatatgtatagaaaaacacaccagcgtcat |
140 |
Q |
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| T |
1590475 |
tctagatatatatatgtatagaaaaacacaccagcgtcat |
1590514 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 1590542 - 1590608
Alignment:
| Q |
168 |
gataaatgaaggagctagctacttagctagtagtagcatccaaaattagcatccaaaattaccactt |
234 |
Q |
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| T |
1590542 |
gataaatgaaggagctagctacttagctagtagtagcatccaaaattagcatccaaaattaccactt |
1590608 |
T |
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