View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17831_low_3 (Length: 565)
Name: NF17831_low_3
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_3 |
 | |
|
| [»] scaffold0459 (1 HSPs) |
| | |
|
| [»] scaffold0366 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0459 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 5562 - 6115
Alignment:
| Q |
1 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
|
| Q |
101 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
|
| Q |
201 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
5861 |
T |
|
| Q |
301 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5862 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
5961 |
T |
|
| Q |
401 |
ctttgctcctttactcttacaggcaaatatgtatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5962 |
ctttgctcctttactcttacaggcaaatatgtatcaatatgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaa |
6061 |
T |
|
| Q |
501 |
aatctttcaaatcctctagttcttttaccactgaatgattctgcagaaccatgt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6062 |
aatctttcaaatcctctagttcttttaccactgaatgattctgcagaaccatgt |
6115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 5562 - 6115
Alignment:
| Q |
1 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5562 |
ttgaatggtactgactcaacaaaggaagcatgatcaccttccaacaacctgcaaggataggtttggctttagaaccagaaatcaatgacaaccgacactt |
5661 |
T |
|
| Q |
101 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5662 |
cagaataaagatgtgtccggtatccgatgtgtgaatgtcgtgttcggtgtttgtgtctatttcaatgcttcatgtctattttgttaaaatggtgaaatca |
5761 |
T |
|
| Q |
201 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5762 |
aagtaactttcacttacttgtaccatctactaggtcttacaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgta |
5861 |
T |
|
| Q |
301 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5862 |
agcaaagtatccccacaaaactgaagttggtatcatttttatggcaggcatagcaaacactgctactccaacaaagagtgattgtaaaaggttgctcact |
5961 |
T |
|
| Q |
401 |
ctttgctcctttactcttacaggcaaatatgtatcaatgtgtttctcaggatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaa |
500 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5962 |
ctttgctcctatactcttacaggcaaatatgtatcaatgtgtttctcaagatcaaatgtgctcttattgttgtctcctttatcttcaccatttaggacaa |
6061 |
T |
|
| Q |
501 |
aatctttcaaatcctctagttcttttaccactgaatgattctgcagaaccatgt |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6062 |
aatctttcaaatcctctagttcttttaccactgaatgattctgcagaaccatgt |
6115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 49706439 - 49706539
Alignment:
| Q |
239 |
acaaaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcattt |
338 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||| |||||||| ||||| || ||||||||| ||| |
|
|
| T |
49706439 |
acaaagaggagcaatatcctttcccagaactgattccccggaagactatctattgccatgtaagcaaaatatccccataaaaccgaggttggtatccttt |
49706538 |
T |
|
| Q |
339 |
t |
339 |
Q |
| |
|
| |
|
|
| T |
49706539 |
t |
49706539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 315
Target Start/End: Complemental strand, 2235423 - 2235350
Alignment:
| Q |
242 |
aaaagaagcaatatcctttcccaaaactgattccctggaagactatcaatagccatgtaagcaaagtatcccca |
315 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
2235423 |
aaaagaagcaatatcctttcccaaaattggttccctgggagactatcaattgccatataagcaaaatatcccca |
2235350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 12308833 - 12308781
Alignment:
| Q |
287 |
tcaatagccatgtaagcaaagtatccccacaaaactgaagttggtatcatttt |
339 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
12308833 |
tcaatggccatgaaagcaaagtatccccacaatacagacgttggaatcatttt |
12308781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University