View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17831_low_4 (Length: 550)
Name: NF17831_low_4
Description: NF17831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17831_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 35355491 - 35356009
Alignment:
| Q |
18 |
gaatatggctaggagaaaaaggttttgataattagtgacaacactacaaaagtagatgttgattcatgtgtaactgtgtatgataataggtcttatatta |
117 |
Q |
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| T |
35355491 |
gaatatggctaggagaaaaaggttttgataattagtgacaacactacaaaagtagatgttgattcatgtgtaactgtgtatgataatatgtcttat--ta |
35355588 |
T |
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| Q |
118 |
tatatagttaggactctagggttgtcacattttgaaaacgaatgctcgacaaattatacaaggtatagtagttagttactttgcatttatatatgattta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35355589 |
tatatagttaggactctagggttgtcacattttgaaaacgaatgctcgacaaattatacaaggtatagt---tagttactttgcatttatatatgattta |
35355685 |
T |
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| Q |
218 |
tgaatgattaactgtttatattaaaatataaggttgtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagatt |
317 |
Q |
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| T |
35355686 |
tgaatgattaactgtttatattaaaatataaggttgtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagatt |
35355785 |
T |
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| Q |
318 |
tcactcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccct |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355786 |
gcactcacttttagaagtcacatttcagcttttaaatgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccct |
35355885 |
T |
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| Q |
418 |
atcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggattgatatttttggagaaatgtt |
517 |
Q |
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| T |
35355886 |
atcaaccaagtaggacaattggatatttgtagcacatttcgtcttttgttctgtctctagcctaaacaaaggttaggaataatatttttggagaaatgtt |
35355985 |
T |
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| Q |
518 |
attttcacacgccttcatttcact |
541 |
Q |
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| T |
35355986 |
gttttcacacgccttcatttcact |
35356009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 253 - 541
Target Start/End: Original strand, 35360014 - 35360299
Alignment:
| Q |
253 |
gtgacttgtgagattataccagacaaattcaagcaaaaatatgttcgatataatgttggtagatttcactcacttttagaagtcacatttcagcttttaa |
352 |
Q |
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|||||||| ||| || |||||||||||||||||||||| | |||| |||| || || |||| ||| ||||| |||||||||||||||||||||| |||| |
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| T |
35360014 |
gtgacttgggaggttgtaccagacaaattcaagcaaaa-tgtgtttgatacaaggtcggtaaattacactctcttttagaagtcacatttcagcctttag |
35360112 |
T |
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| Q |
353 |
atgtaactaatcatgactatgtttagcaatttcattcgatttatatttcttctaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
452 |
Q |
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| T |
35360113 |
atgtaactaatcatggccatgtttggcaatttcattcaatttatattttttttaggattttccctatcaaccaagtaggacaattggatatttgtagcac |
35360212 |
T |
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| Q |
453 |
atttcgtcttttgttctgtctctagcctaaacaaaggttaggattgatatttttggagaaatgttattttcacacgccttcatttcact |
541 |
Q |
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| T |
35360213 |
atttcgtctctt-ctctgtctctagcctaaacacagcaaataattg-tatatttgaagaaatgttattttcacacgccttcttttcact |
35360299 |
T |
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